Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0736
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    65   3e-11
Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     31   0.46 
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    30   0.80 
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    30   0.80 
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    30   0.80 
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     30   0.80 
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     30   0.80 
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     30   0.80 
Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    28   4.3  
Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    27   9.9  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +1

Query: 256 GQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT-DE 432
           G +    I+KF+D              D  REIA+E GFE +E   +VIDH NYD T D 
Sbjct: 85  GSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTLDS 144

Query: 433 GDHTRIVVSPKNLIKAPPIV 492
           GDHT +VV    LI A  IV
Sbjct: 145 GDHTTLVVGKDQLISAELIV 164



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = +2

Query: 74  LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEF 253
           LVL +   +K+THS F  S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP V  F
Sbjct: 24  LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGVQVF 83


>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 426 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 426 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 438 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 426 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 434 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 258
           PS   S    SMT   S S ++  S  +S   +PA + P I  +  PSS N    S++T 
Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545

Query: 257 PQTRARKE 234
           P + + ++
Sbjct: 546 PDSASSQK 553


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 438 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 438 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 93  ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 426 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 331
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185


>Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical
           protein ZK218.11 protein.
          Length = 270

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -1

Query: 494 PTIGGAL-IRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAI-SLYTSPAAAL 321
           PTIG  L     GDT   +++P +      +S    D+  I+ P  + +    T+     
Sbjct: 40  PTIGVELNCTVFGDTDF-IYTPEATNCVNTYSDKTCDTIYIATPAVQPVPGASTARPLKC 98

Query: 320 PAIRRFPPSSMNLVMASLSTCPQT 249
            A     P + +LV A++STCP+T
Sbjct: 99  YAAAATDPVNPDLVNAAVSTCPKT 122


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 386 SSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPQTRARKERIL*DSCIN 207
           SS +++P S    L  + A   PAI   PPS  +L++  +    + + R+  +L   C +
Sbjct: 126 SSDMTSPGSAFTPLNINLARFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAML---CGS 182

Query: 206 ILRILTGPD--LHHP 168
           +  IL+  +  L HP
Sbjct: 183 LEEILSEQEMTLRHP 197


>Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 279 YGLTVYLSTNSSTEGANTMRFLYKYSPYFDRTR 181
           +G  VY    S+T     ++F+Y+Y   FD T+
Sbjct: 86  FGFVVYTGLYSATTCLIAIQFIYRYWAVFDETK 118


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 386 SSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPQTRARKERIL*DSCIN 207
           SS +++P S    L  + A   PAI   PPS  +L++  +    + + R+  +L   C +
Sbjct: 126 SSDMTSPGSAFTPLNINLADFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAML---CGS 182

Query: 206 ILRILTGPD--LHHP 168
           +  IL+  +  L HP
Sbjct: 183 LEEILSEQEMTLRHP 197


>Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 279 YGLTVYLSTNSSTEGANTMRFLYKYSPYFDRTR 181
           +G  VY    S+T     ++F+Y+Y   FD T+
Sbjct: 86  FGFVVYTGLYSATTCLIAIQFIYRYWAVFDETK 118


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 395 AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPQ 252
           A   + I  PH   ++ YT P   +P +  FP ++M LV   +  CPQ
Sbjct: 368 ATTGAVIVKPH---LAKYTCPDGRVPML--FPQNNMPLVCNPVKGCPQ 410


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -1

Query: 437 SPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP 300
           +P S+ S +KWSM      S+    S  ISL TSP A  P +  FP
Sbjct: 38  TPDSMKS-VKWSMFNLHVWSVFLDLS--ISLMTSPFALFPVLAGFP 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,695
Number of Sequences: 27780
Number of extensions: 207929
Number of successful extensions: 565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)