Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0735
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 243 2e-65
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 240 1e-64
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 27 3.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 5.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 7.1
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 25 7.1
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 7.1
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 9.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.3
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 243 bits (595), Expect = 2e-65
Identities = 124/190 (65%), Positives = 142/190 (74%), Gaps = 1/190 (0%)
Frame = +1
Query: 49 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 225
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 226 GFLVVNG*QNAVFSERDPKAIPRGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 405
G LV++G V +ERDP I +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124
Query: 406 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAHLQRVFMITLKIVEGLMXXXXXXXXX 585
S DAPMFVVGVNLE ++PS KVISNASCTTNCLA L +V T I EGLM
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 586 XXXXDGPSGK 615
DGPS K
Sbjct: 185 QKTVDGPSKK 194
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 240 bits (588), Expect = 1e-64
Identities = 122/190 (64%), Positives = 142/190 (74%), Gaps = 1/190 (0%)
Frame = +1
Query: 49 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 225
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 226 GFLVVNG*QNAVFSERDPKAIPRGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 405
G LV++G V +ERDP I +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124
Query: 406 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAHLQRVFMITLKIVEGLMXXXXXXXXX 585
S DAPM+VVGVN E ++PS KVISNASCTTNCLA L +V T I EGLM
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 586 XXXXDGPSGK 615
DGPS K
Sbjct: 185 QKTVDGPSKK 194
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 542 IFKVIMNTLCKWARQFVVQEAFEMTLKE 459
I+K+ +C+ AR V+Q FE LKE
Sbjct: 701 IYKLSAVDMCELARNSVLQSGFERQLKE 728
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -3
Query: 384 FSTSLQVSRCFICSGKDTSRLYNIFSPSFSPGNGLRVPF*ENGILLPVNNKESILNLNT 208
FS + V+ S + ++ +++ S S SP + VPF + + PVNN + LNT
Sbjct: 147 FSLNPSVATSTNISPRRHAKSHSVASVS-SPNSHNAVPFTPHAFVPPVNNASPLPALNT 204
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 64 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 174
GF RI +R EKG QVV D I + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 176 SMIPPMAVLRAVLRFRMDSLLLTGNKMPFSQKGTLRPF 289
S++ P ++ R+D + LT N +PF Q PF
Sbjct: 295 SVLTPKELVEMFKFLRIDPIELTKNPIPFQQSTDAIPF 332
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 31 LADNMSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLD------YMVYLFKYDSTH 192
+ D+ ++ +N F +G+L++ + ++ + ND ++ YM Y+F+ +
Sbjct: 515 VGDHTGQLWLNVFDDVGKLIMHKTADE-LNDLQENDENAFMNCMAEACYMPYIFQCRAKQ 573
Query: 193 GRFKGSVEVQDGFLVVN 243
FKG + V+ + +N
Sbjct: 574 DNFKGEMRVRYTVMSIN 590
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 359 DALSVVVKTPVDSTTYSAPAFPLGMALGSLSEKTAFCYPLTT 234
D S K + S +P F LG L +++ AFC + T
Sbjct: 419 DPASSATKQNIPSRLIISPQFALGSVLEYENQRRAFCDEVAT 460
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 243 VNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 100
+ N+ESIL+L L + + E I++IV+ +D R HLS L +
Sbjct: 342 LQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,792
Number of Sequences: 5004
Number of extensions: 60027
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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