Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0734
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 48 1e-06
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 48 1e-06
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.001
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 37 0.002
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 36 0.004
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 36 0.004
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 36 0.007
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 36 0.007
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 35 0.010
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 35 0.010
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 34 0.017
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 34 0.017
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.023
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.030
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 33 0.040
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 32 0.069
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.069
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 32 0.091
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 32 0.091
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 32 0.091
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 31 0.12
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 31 0.16
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.21
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.21
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 31 0.21
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 30 0.28
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 30 0.28
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 30 0.28
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 30 0.28
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 30 0.37
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 30 0.37
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.49
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 29 0.49
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.85
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 28 1.1
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 1.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.1
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 28 1.5
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 2.6
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.4
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 3.4
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 3.4
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 4.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.5
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 4.5
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.5
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 6.0
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 6.0
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.0
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 7.9
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 7.9
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXX 549
+ ++ R L+ L KI + +D + L+SAS + L+VWD HT+N+
Sbjct: 9 VNIQGTRVLKNKLGKIPDIDISTDGKYLLSASTNDVLLVWDLHTSNKVAFFEAPSVWIMT 68
Query: 550 XXXXXXXSYVACGGLDNICSIY 615
+A GGL+N C +Y
Sbjct: 69 CAFSPSTKSIAAGGLNNFCVVY 90
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 653 ELPGHSG*LFCCRFLD 700
EL GH+G + CC+++D
Sbjct: 101 ELVGHAGFVSCCKYVD 116
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
TLRGH+A +Y W +DSR LVS+SQD L VWD
Sbjct: 426 TLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWD 459
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 349 NLEPIGRIQMRTRR-TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
N I +++RT TL GH A I + WG + + S+S D + +WD+
Sbjct: 249 NTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNW-IYSSSYDKTIRIWDA 297
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 498
L GH +++A+ W D + + S D + +W SH
Sbjct: 469 LPGHEDQVFAVDWSPDGQRVASGGADKAVRIW-SH 502
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T++GH + + W D+ + + S D + WD
Sbjct: 172 TMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWD 205
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
LRGHLA + ++ + S + +V+AS D L WD TT C R AH
Sbjct: 343 LRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDI-TTGHCIRIIHAH 388
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
L GH + + + LVS S D +I+WD
Sbjct: 257 LYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIWD 289
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 373 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
Q R R L GH +IY++ + D + LVS S D + +WD
Sbjct: 365 QKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWD 404
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
L GH +Y++ + D + LVS S D + +W+
Sbjct: 454 LHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 486
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 385 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
++ L GH + + W +D L+S S D +LIVWD
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVWD 73
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
R L GH I ++ W S R L++AS+D K I+WD
Sbjct: 60 RVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWD 94
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTR 519
R+ R L GH I + W DS+ +VS D +IVW+ T R R
Sbjct: 125 RSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVWNGTTFERLKR 171
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNR 510
RGH I+++H D + + DG + +W + NR
Sbjct: 15 RGHRLSIFSIHIHPDGSRIATGGLDGTIRIWSTEAINR 52
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
R +T+RGH IY++ + +S LVS D + WD TN
Sbjct: 538 RRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDVFKTN 580
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSR 525
R GH + A+ D + SA +G + +WD T R R
Sbjct: 499 RVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMR 544
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
R L GHLA+I + + DS L S S D K+ +WD + +
Sbjct: 92 RRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWDCRSNS 131
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.010
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 268 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 447
Q + + +AI D T + T + I Q TLRGH ++ + W
Sbjct: 7 QHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66
Query: 448 N--LVSASQDGKLIVW 489
L SAS DG +IVW
Sbjct: 67 GTILASASYDGHVIVW 82
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
L GH+ + + W D R L+S S D +I+WD+ T
Sbjct: 251 LIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFT 286
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 504
TL+GH +++ + W SD L S D + +WD+ ++
Sbjct: 299 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 336
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 346 SNLEPIGRIQMRTR-RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRS 522
+ L I ++ +T+ RT+ GH A++ + W + L S S+ G + D N +
Sbjct: 242 NGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT 299
Query: 523 RCAHXXXXXXXXXXXXS-YVACGGLDNICSIYS*R 624
H +A GG DN+ I+ R
Sbjct: 300 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 334
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.023
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXX 558
+ R GH IY++ + + R +VS S D +WD T +C
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVE-TGQCILKLEIENGVTAIAI 451
Query: 559 XXXXSYVACGGLDNICSIYS 618
++A G LD I ++S
Sbjct: 452 SPNDQFIAVGSLDQIIRVWS 471
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 504
L GH +Y++ + DS L+S S D + VW+ T
Sbjct: 480 LEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQAT 516
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 33.5 bits (73), Expect = 0.030
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRC 528
+ R TL GH I + W + S+ L SAS D + +WD RC+ RC
Sbjct: 84 LTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFE--KRCS-VRC 133
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 33.1 bits (72), Expect = 0.040
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 325 TSLAQATSNLEPIGRIQMRTRRTLRG----HLAKIYAMHWGSDSR-NLVSASQDGKLIVW 489
TS TS + + Q TR RG H + +++ +DS NLVS S+DG +I W
Sbjct: 197 TSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIFW 256
Query: 490 DSHT 501
D T
Sbjct: 257 DMRT 260
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
GH + A+ W S+ + L S S DG + VW+S
Sbjct: 435 GHTKDVTAVDWSSEGQ-LASISDDGSVRVWNS 465
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.069
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
LRGH A I+A+ + L+SA +GK+ +WD T
Sbjct: 225 LRGHAAWIFAVAFNPVGDLLLSADVEGKIKIWDIDT 260
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 32.3 bits (70), Expect = 0.069
Identities = 24/81 (29%), Positives = 32/81 (39%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXS 573
L GHLA++ + + LVSAS D +WD HT S
Sbjct: 261 LEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGS 320
Query: 574 YVACGGLDNICSIYS*RRAKA 636
V+ GG D I I+ R K+
Sbjct: 321 LVSSGGNDAIGRIWDLRSGKS 341
Score = 31.9 bits (69), Expect = 0.091
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 322 DTSLAQATSNLEPIGRI-QMRTRRT---LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
D SL + N + IGRI +R+ ++ L H+ +I AM W + L ++S D + +W
Sbjct: 318 DGSLVSSGGN-DAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
Query: 490 D 492
D
Sbjct: 377 D 377
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 31.9 bits (69), Expect = 0.091
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
R L H ++ + W S+ L S D L+VWD
Sbjct: 368 RVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWD 402
Score = 25.4 bits (53), Expect = 7.9
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = +1
Query: 325 TSLAQATSN--LEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 498
T LA T N +E + RT+ GH ++ A+ W + L S +D ++ D
Sbjct: 304 THLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSW--NDHVLSSGGRDNHILHRDVR 361
Query: 499 TTNRCTRSRCAH-XXXXXXXXXXXXSYVACGGLDNICSIY 615
R AH + +A GG DN ++
Sbjct: 362 APEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVW 401
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 31.9 bits (69), Expect = 0.091
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWD 492
TL GH ++Y + W D L S+S D ++ +WD
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.9 bits (69), Expect = 0.091
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
T++ H + A+ D R + SASQD + +WDS T
Sbjct: 460 TIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSST 496
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH-XXXXXXXXXX 564
+TL GH I + + S +VSA+ DG + VW S ++ C + H
Sbjct: 543 QTLEGHTGAILKLIYISQGTQVVSAAADGLVKVW-SLSSGECVATLDNHEDRVWALASRF 601
Query: 565 XXSYVACGGLDNICSIY 615
S + GG D + S++
Sbjct: 602 DGSLLVSGGADAVVSVW 618
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
LRGH ++A + SR L S S D + +W+ T +C ++ H
Sbjct: 503 LRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNV-DTQQCVQTLEGH 548
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 325 TSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 504
T+LA L + + + + R ++IY + W DS L++ + D L ++D+HT
Sbjct: 102 TTLADDAEELA-LAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAHTG 160
Query: 505 NRCTR 519
T+
Sbjct: 161 QLLTQ 165
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 385 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
R TLRGH + ++ D ++S S D + +W S TN C + AH
Sbjct: 385 RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIW-SLETNTCLHTFSAH 433
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
TL GH+ ++ + +D L+S + DG + VW++
Sbjct: 469 TLFGHIEGVWEI--AADHLRLISGAHDGVVKVWEA 501
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.21
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
LRGH+ ++Y++ + +SA D K+ +W+
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKIRIWN 645
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
RTLRGH + + D +VSAS DG L VW + T
Sbjct: 571 RTLRGHTDSVREVACLGDL--IVSASYDGTLRVWKAST 606
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 325 TSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T A AT N+ + R L+GH ++ + +DS LV+AS D +W+
Sbjct: 232 TCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWE 287
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T GH + A+ + D + L ++S+DG + VWD
Sbjct: 78 TFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWD 111
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 415 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSR 525
I + + D L+S +D L VWD +N+C R
Sbjct: 301 ISCLSFSQDGNYLLSRGEDNALRVWDLRNSNKCVNER 337
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 218 HVEQTIDNPAPRTYNTQRTDPSVSNVPS 135
+V + +N +P Y+ RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
LRGH +IY++ + + +S S D + VWD T
Sbjct: 543 LRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLST 578
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
+ H + + + SD + +++ + DGK+ VWD ++
Sbjct: 336 QSHYDALSTLQYSSDGQRIITGADDGKIKVWDMNS 370
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQD 471
R GH I ++ W +DSR +S S+D
Sbjct: 140 REYTGHFDDIVSISWSADSRFFISTSKD 167
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 343 TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
T+ L + I+ L GH + + + D + + + S+DG L VW
Sbjct: 169 TARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTVSKDGALFVW 217
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
TL GH + ++ + S L S S D + +WD
Sbjct: 462 TLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWD 495
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNR 510
L H + + W + L+S Q+G L++W T++R
Sbjct: 258 LHWHANPLNGLSWALNGEYLLSGGQEGVLVLWQMETSHR 296
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
L+GH ++A+ + + L SA DG + +W ++N
Sbjct: 463 LQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSN 500
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
TL GH + + M + L S S D +IVWD
Sbjct: 99 TLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVWD 132
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
L GH + +M DS+ LV+ S D + +W + C +S AH
Sbjct: 572 LYGHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGD-CHKSIFAH 617
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
RT +GH I + + D R+ +S S D + +WD+
Sbjct: 304 RTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDT 339
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 IQMRTRRTLR---GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
+ ++TR+ +R GH ++ + + R LV+AS DG + WD T
Sbjct: 557 VDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPT 603
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 382 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTR 519
+ +T H + + W SD+R L S D ++ VW+ + R
Sbjct: 238 SNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR 283
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 331 LAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+ + NL + + T+ GH I A D+ + +AS DG ++ WD
Sbjct: 290 VVNSKGNLTYLNPSDCKVIDTIYGHQRSITAATLSPDATHFYTASYDGTVLSWD 343
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
R GHL+ +YA+ LV+A +D VWD T
Sbjct: 241 RHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRT 278
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
L GH + ++ W ++S+S D +IVW+ T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDT 299
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
L GH I A+ W D + + D ++ +W S T
Sbjct: 100 LTGHKDSIVAIDWSFDGTYIATGGMDSQVRLWKSST 135
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +1
Query: 307 RKAACDTS---LAQATSNLEPIGRIQMRTR----RTLRGHLAKIYAMHW--GSDSRNLVS 459
R +ACD+ +A N + I +R TLRGH + A+ W GS S+ L +
Sbjct: 275 RLSACDSDVNLMATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSK-LAT 333
Query: 460 ASQDGKLIVWD 492
D + +WD
Sbjct: 334 CGDDCVVSLWD 344
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
L G I + W DSR + +S D L+ WD+
Sbjct: 89 LNGCKGAITDLQWSRDSRVVYCSSSDTHLMSWDA 122
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 394 LRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHT 501
L GH ++ W D L+S+ +DG+ +VW+ T
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVET 292
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 313 AACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV 456
AACDT + A +E +G + ++ ++L+G +++A +G DS +V
Sbjct: 376 AACDTFRSGA---IEQLG-VHVKNLQSLKGSSIELFAQGYGKDSSFVV 419
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 415 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
I + W D R L++ S G+ +W+ T N
Sbjct: 84 INVVRWTPDGRRLLTGSSTGEFTLWNGLTFN 114
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 498
+ ++ H ++ + + + V+AS DG L VW+ H
Sbjct: 158 KIVQAHEMEVRDVAFSPNDSKFVTASDDGSLKVWNFH 194
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 439 DSRNLVSASQDGKLIVWDS 495
D+ L+S +DG ++VWDS
Sbjct: 307 DASLLISGDKDGNVLVWDS 325
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 400 GHLAKIYAMHWGSD---SRNLVSASQDGKLIVWDSHTTNRCT 516
GH I +M G S L +AS+D + +WD T N T
Sbjct: 172 GHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLT 213
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 436 SDSRNLVSASQDGKLIVWD 492
S R L+SAS DG++ +WD
Sbjct: 1189 SGMRELISASSDGEVKLWD 1207
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
GH + + ++ D+R +VS S+D + +W+
Sbjct: 103 GHTSDVLSVSISPDNRQVVSGSRDKTIKIWN 133
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
L GH + + + SD R L S S+D L +W
Sbjct: 190 LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLW 221
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
++ H +I + W L S D L VWD
Sbjct: 245 MKVHEQEICGLQWDRSLGQLASGGNDNNLFVWD 277
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 403 HLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSHTTNRCTRSRCAH 534
H + A+ ++ NL VS S D L +WD T N C +S H
Sbjct: 253 HTDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCN-CVKSFTYH 296
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 199 SIVCST*AVCDACINHERADSLRQEAETLKNAIRDARKAACDTSLAQATSN---LEPIGR 369
+++ + AVCD+C + +R++ E ++ ++ + +++ S+ LE
Sbjct: 22 TVLTKSDAVCDSCFVRRIENKIRRQFELVRPNLQGRKSKRAMLAISGGISSMAMLETANY 81
Query: 370 IQMRTRRTLRGHLAKIYAMH--WGSDS 444
+ R ++ A+H WG+DS
Sbjct: 82 LSKYRDDNYRPMFDELLAVHFQWGTDS 108
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
L GH + + D R +++AS D + +W S +C S AH
Sbjct: 212 LVGHTDNVRDILISDDGRTILTASSDATIKLW-SLRAQKCLFSFIAH 257
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
TL GH + + + L+S S D LIVWD
Sbjct: 127 TLIGHTDYVKCLLLLEEEGLLLSGSTDASLIVWD 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,001
Number of Sequences: 5004
Number of extensions: 49264
Number of successful extensions: 258
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -