Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0731
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   149   4e-37
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    30   0.27 
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    27   2.5  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    25   5.8  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   7.7  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   7.7  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  149 bits (360), Expect = 4e-37
 Identities = 70/84 (83%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
           LTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A  VQ+
Sbjct: 363 LTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQ 422

Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
           +LQ+YKSLQDIIAILGMDELSE D
Sbjct: 423 MLQEYKSLQDIIAILGMDELSEAD 446



 Score =   99 bits (238), Expect = 2e-22
 Identities = 47/75 (62%), Positives = 60/75 (80%)
 Frame = +1

Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
           +LTV RARK+QRFLSQPF VAEVFTG  G+LV L++TI+ F +IL G +D LPE AFYMV
Sbjct: 447 KLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMV 506

Query: 433 GPIEEVVAKADTLAK 477
           G I++ V KA+ +A+
Sbjct: 507 GSIDDAVKKAEKIAQ 521


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +2

Query: 2   LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
           +T P P  T    +    + R +    IYP ++ L S SR+M   I       +H +V+ 
Sbjct: 339 ITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSN 398

Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
            +  +    +    + +++G + LS+ED
Sbjct: 399 QLYAMYAIGRDAASMKSVVGEEALSQED 426


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 304 KVVRGTSEFYVHVPLSTVFFRQLVHTQNS 218
           K++ GT +FYV+     V+F+++VH +++
Sbjct: 22  KMLPGTGKFYVNGSPFDVYFQRMVHRKHA 50


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 17  PATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIGAEHYNVARGVQKILQ 190
           P   F      +  SR +A  G  P+  V+P +S ++I+D   I    Y+    V+++ +
Sbjct: 106 PGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIPVSSYDNQLAVRQMTE 165

Query: 191 DYKSL 205
            Y  L
Sbjct: 166 GYIDL 170


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 98  DPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 229
           + +D+T +  +P  I  E   V +  Q ++ + + ++DI++ LG
Sbjct: 371 EEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLG 414


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 83  YP-IQQWLWRVQW*HPS 36
           YP I QWL R+ W HP+
Sbjct: 259 YPHINQWLKRLYWKHPA 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,012
Number of Sequences: 5004
Number of extensions: 48303
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)