Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0731
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 162 2e-40
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 32 0.25
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 31 0.43
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 31 0.57
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 31 0.57
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical pr... 27 7.0
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 27 9.3
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 162 bits (393), Expect = 2e-40
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
LTDPAPATTFAHLDATTVLSR IAEL IYPAVDPLDSTSRIMDPN++G HY++ARGVQK
Sbjct: 376 LTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQNHYDIARGVQK 435
Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
ILQDYKSLQDIIAILGMDELSEED
Sbjct: 436 ILQDYKSLQDIIAILGMDELSEED 459
Score = 117 bits (282), Expect = 5e-27
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +1
Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
+LTV+RARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM
Sbjct: 460 KLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQ 519
Query: 433 GPIEEVVAKADTLAK 477
G I++V KA+ LAK
Sbjct: 520 GGIDDVFKKAEELAK 534
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM----DPNIIGAEHYNVAR 169
+T P P T + + + + + IYP +D L S SR+M + +H +++
Sbjct: 353 ITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSN 412
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G++ LS +D
Sbjct: 413 QLYACYAMGKDVQAMKAVVGVEALSPDD 440
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 31.5 bits (68), Expect = 0.43
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
+T P P T + + R + IYP ++ L S SR+M I +H +V+
Sbjct: 341 ITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSN 400
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G + LS +D
Sbjct: 401 QLYACYAIGKDVQAMKAVVGEEALSSDD 428
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 270 TCHCQLSSSDNSSIPKIAIMSCRDL 196
TC C L S D S +PK+ SC+ L
Sbjct: 1097 TCKCPLGSKDESPVPKLPGRSCKGL 1121
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 270 TCHCQLSSSDNSSIPKIAIMSCRDL 196
TC C L S D S +PK+ SC+ L
Sbjct: 1097 TCKCPLGSKDESPVPKLPGRSCKGL 1121
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 178 ENSSGLQIPAGHYCYFG 228
ENS+G + AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440
>Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical
protein T22H6.4 protein.
Length = 342
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 38 LDATTVLSRAIAELGIYPAVDPLDSTSRIMD 130
+D ++ A LGIYPA+DP+ + I D
Sbjct: 275 IDVGVAANKTAAFLGIYPALDPMIAIFLIKD 305
>Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical
protein C41C4.3 protein.
Length = 630
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = +1
Query: 322 FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAKNA*KVISC 501
F + KL+ L S I AG +DH E+ F + + + L N +I
Sbjct: 361 FLSKSSKLISLTLQCNSISSIAAGAFDHFTELQFLNLAG-NRIASLPSNLLLNLNNLIVL 419
Query: 502 ELRENTCISNKFNYY 546
+L+ SN Y
Sbjct: 420 DLKALDNSSNTIGTY 434
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 286 SEFYVHVPLSTVFFRQLVHTQNSNNVLQGFVVLKN 182
S Y +V S +FF+ L T N N QGF + N
Sbjct: 203 SSTYTNV-FSQLFFKLLCDTHNKNQESQGFKITNN 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,382
Number of Sequences: 27780
Number of extensions: 269907
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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