Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0731
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 193 VLKNFLNSTCNI 158
           +++N LNSTC++
Sbjct: 340 IVRNHLNSTCSV 351


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 229 TQNSNNVLQGFVVLKNFLNSTCNIVVLS 146
           ++N N       V KNF N  C  + L+
Sbjct: 90  SENKNCNAGSLTVKKNFANKYCGNITLN 117


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 334 HVQ*TPQLLGKVVRGTSEFYVHV 266
           HV+ TP LL   + G +EF   V
Sbjct: 332 HVEVTPPLLSVHLGGNAEFRCEV 354


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 334 HVQ*TPQLLGKVVRGTSEFYVHV 266
           HV+ TP LL   + G +EF   V
Sbjct: 332 HVEVTPPLLSVHLGGNAEFRCEV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,869
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)