Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0729
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   2.5  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   2.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   7.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.8  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 306 LSSICHYCLHAFIGGTLPDTILASCVRVYFFKSVID 413
           L SIC  C   F    L +    +C    +FK  ID
Sbjct: 65  LDSICEDCYMLFREPQLHNLCRKNCFTTDYFKGCID 100


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 306 LSSICHYCLHAFIGGTLPDTILASCVRVYFFKSVID 413
           L SIC  C   F    L +    +C    +FK  ID
Sbjct: 65  LDSICEDCYMLFREPQLHNLCRKNCFTTDYFKGCID 100


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 486 CSGENRPP 509
           C+G+NRPP
Sbjct: 553 CNGDNRPP 560


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 52  GKWCPR 69
           GKWCPR
Sbjct: 117 GKWCPR 122


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 161 ADFVWSAFNSIFGFDGSFQSVPNTMLM 81
           A F+   FNS+F  D   Q V N  ++
Sbjct: 439 AQFIVGTFNSVFICDLIEQKVKNIQML 465


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 52  GKWCPR 69
           GKWCPR
Sbjct: 273 GKWCPR 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,105
Number of Sequences: 336
Number of extensions: 3814
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)