Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0729
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    31   0.13 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.68 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   3.6  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   6.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.4  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   6.4  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 296 VIP*NFSNTVEHSVKLREPRDSKRSARSYYCRQSSMQLKD 177
           V+P NF  T+   VK  + R      R YYCRQ S++ K+
Sbjct: 283 VVPVNFKFTLLGEVKFHKLRLFLMERRYYYCRQRSVRRKE 322


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -1

Query: 308 KKIGVIP*NFSNTVEHSVKLREPRDSKRSARSYYCRQSSMQLKDFN*QRADFVWSAFNSI 129
           ++IG++P N+    E S K++   D  + +      Q+   L  +    +D++   FN+ 
Sbjct: 66  EEIGIVPSNYITEAEPSTKMKALYDYTQQSVDEISFQADQTLDCYGDTDSDWILVGFNNN 125

Query: 128 FG 123
           FG
Sbjct: 126 FG 127


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 267 HGVREILWNHTDLLSSICHYCLHAFIGGTLPDT 365
           HG R I     DLL+    Y L+ F  G L D+
Sbjct: 460 HGTRTIFGAFKDLLNCFRRYILNNFFDGMLQDS 492


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 235 SLGSRSFTECSTVFEKFYGITPIFFHRS 318
           SLGSRSF+    VFEK       F  +S
Sbjct: 569 SLGSRSFSHALNVFEKHLNTLKHFSRKS 596


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 484  IVSYKTDWLNCALLEKTRN-ACQI*SITLLKKYTRTHEAKIVSGSVPP 344
            +V++K  W + A  ++ R  A ++      K YTR  E K + G  PP
Sbjct: 903  LVTFKETWASRAACQQRRGRAGRVKKGICYKLYTRGFEEKGMLGQTPP 950


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 ESLGSRSFTECSTVFEKFYGITPI 303
           E+LG+  FTE   V EK+Y   P+
Sbjct: 102 EALGALGFTESLPVLEKYYKEDPL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,646
Number of Sequences: 5004
Number of extensions: 65954
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)