Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0729
         (731 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    28   0.34 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   1.0  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    26   1.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   9.7  

>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydrogenase
            protein.
          Length = 1325

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 441  RKREMRVKFSQ*HS*RNTLAHTRPKLYPAAFRR*MHVNSSGRSMKEDRCDSIEFLEHRGA 262
            ++RE   KF++ H  R    H  P ++  AF   +H+N SG  +   + D    L H G 
Sbjct: 970  KRREAVEKFNEEHRWRKRGIHVVPTMFGIAFTV-LHLNQSGALIHVYQ-DGTVLLTHGGT 1027

Query: 261  -FGKTP*TQRLQAISQIILLP 202
              G+   T+ +Q  +  + +P
Sbjct: 1028 EMGQGLHTKMIQVAATALGIP 1048


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 280 SRTPWSIR*NSVNPETPSDQP 218
           SR+    R N+  PETPSDQP
Sbjct: 619 SRSTSKQRANAKTPETPSDQP 639


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 227 AWSLWVHGVLPNAPRCSRNSMESHRSSFIDLPL 325
           +W L + GV    PRC + S++S     + LPL
Sbjct: 41  SWPLQLSGVCCTVPRCWQVSLDSDYQIDVVLPL 73


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 246  TEFYRMLHGVREILWNHTDLLSSICHYCLHAFIGGTL 356
            T    ++  ++E  + H D+L  IC Y     +  TL
Sbjct: 1179 TNLQTIVISLKEEFYCHADVLIGICPYPAECLVSQTL 1215


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,392
Number of Sequences: 2352
Number of extensions: 16449
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)