Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0729
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily ass...    29   4.5  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    29   4.5  
AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 143 LTTQSLRVVN*NPSIAWRIVGNNMIW 220
           L T S R +  N  I   IVGNNMIW
Sbjct: 827 LPTHSYRNIQLNEQIEGLIVGNNMIW 852


>U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform a protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 131 IFGFDGSFQSVPNTMLMTCYGLGHHLPV 48
           I G DG   ++P TML   YG+   LP+
Sbjct: 118 ILGPDGDMNNIPPTMLSDQYGMAAMLPI 145


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 131 IFGFDGSFQSVPNTMLMTCYGLGHHLPV 48
           I G DG   ++P TML   YG+   LP+
Sbjct: 354 ILGPDGDMNNIPPTMLSDQYGMAAMLPI 381


>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 155 FVWSAFNSIFG-FDGSFQSVPNTMLMTCY 72
           F+W  F+ +F  F   +Q VPN   M C+
Sbjct: 161 FIWFLFDFLFQIFSSEYQRVPNCATMACF 189


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 556 N*IMRLSPHLSSILNIGGRFSPEHIVSYKTDWLNCALLEKTR 431
           N I+ ++    S+ N GG+F+ + +  Y   W+N  L  KTR
Sbjct: 221 NDILSINSEFVSVQNYGGKFTVKDLNLYLKHWIN-GLNHKTR 261


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +2

Query: 221 LIAWSLWVHGVLPNAPRCSRNSM-ESHRSSFI-DLPLLFTCIYRRNAAGYNFGLVCASVF 394
           L+ W     G L +   C + +M E  + +F+ D+ +    ++  +  GY+ GL C SV 
Sbjct: 553 LLLWKFCSRGTLQDVIYCEKFAMDEKFQGAFVRDITMGLEYLHS-SPIGYHGGLACWSVL 611

Query: 395 L*ECY*LNLT 424
           + + + L LT
Sbjct: 612 IDKNWMLKLT 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,598
Number of Sequences: 27780
Number of extensions: 370841
Number of successful extensions: 908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)