Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0727
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    30   0.43 
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    28   1.8  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.0  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   5.4  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   7.1  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   9.4  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 464 CTCIWRSHGCSERYPAFMAGGRKEDFERSLPLLKVMGAK 580
           C  +W  H   +RY  +M    K++ E++  LLK  G+K
Sbjct: 69  CLRVWLKHKSRKRYHGYMTSTDKDEEEKNDYLLKSNGSK 107


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 100 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTP--ATPLLQP 273
           +S T+ NVA +G GN+GG +   +  KGF          + N  A + +     +   QP
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVAISSMEGHYVSKDYQP 60

Query: 274 LMESTW 291
           +  S W
Sbjct: 61  INLSEW 66


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 345 DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAPVSGGVMGAQ 497
           +G+    +KG +++D      P+  ++   +A +KG+ F  + VSGG  GA+
Sbjct: 89  EGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSGVSGGEEGAR 139


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 594 PQWNCLAPITLRRGRDLSKSSLRPPAMK 511
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 411 VPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLPSWPEVVKKTSKGPFLSSK*WELSSST 590
           +PK + P  L+ G+G     + GG+  +    L  W EV++ T   P   S+    +++T
Sbjct: 266 LPKNLHP--LQSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFL-PLFDSEKLRFATAT 322

Query: 591 ADR 599
           + R
Sbjct: 323 STR 325


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 89  DGRIVLTPTRMWLSSASETWEGSWLRTWLK 178
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 STCTWAKMALWLMRKKDRF*SIRV 396
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,033
Number of Sequences: 5004
Number of extensions: 79433
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)