Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0726
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   1.6  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   5.0  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.7  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    24   8.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   8.8  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   8.8  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    24   8.8  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 130 FRSIPDDAFLTELARIQQ*RSSNFYKTLVYNFINILWNLY 11
           +  IP+D  L ELA I Q    N    +  NF++ L +L+
Sbjct: 68  YYEIPEDDELDELASIPQWFKKNVTSNIFKNFLHYLKSLF 107


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 231 VSMILHVHENSRSTVS*YPDPSEN 160
           +S I+HV++N +     +P+PS+N
Sbjct: 133 LSYIIHVYQNLKDGDYEFPEPSQN 156


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 145 LTADRFRSIPDDAFLTELARIQQ*RSSNFYKT 50
           LT + + +IP+   LT   R +Q R   FY T
Sbjct: 140 LTDEDWNNIPEPGDLTRKKRTKQPRRERFYAT 171


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 198 CYFHEHAESWIP--DPISKSRMKILIHLF 278
           C+  E AESWIP  + + K++  + I  +
Sbjct: 77  CFTKEQAESWIPLVEAVHKNKSFLFIQFW 105


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 147  LDICDSLMDQDIMTPLTCYFHEHAES 224
            LD  D+ +DQ  +T +  Y  +HA S
Sbjct: 1159 LDEIDAALDQTNVTKIANYIRQHASS 1184


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 168 MDQDIMTPLTCYFH-EHAESWIPDP 239
           +D DI  P  C++H E  ESW P P
Sbjct: 414 IDPDIEDPSKCHWHSEVPESW-PSP 437


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 192 LTCYFHEHAESWIPDPISKSRMKILIHLFNVLI 290
           +T  FH ++ +W P  +  +   IL  +F++L+
Sbjct: 155 ITKLFHIYSVNWCPSKLGGTITYILFWMFSLLV 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,492
Number of Sequences: 5004
Number of extensions: 30708
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)