Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0723
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    28   1.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.4  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.3  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   4.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   7.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   9.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.9  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   9.9  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   9.9  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.9  

>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 239 DIGNEKIHKFVASVCVLNYLMFKVCPSLYAAIYLVEHIFTGPAYIWFILILIIYHSIFLI 418
           D  N  + K   + C+L+   F    ++YA      +  TG   +W I IL   +     
Sbjct: 97  DSWNHHLEKLFIATCLLSISTFIDMLAIYA------YPDTGEWMVWVIRILYYIYVAVSF 150

Query: 419 VYCVLVNF 442
           +YCV+  F
Sbjct: 151 IYCVMAFF 158


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 131  LQDGLINWDHDRDIIENISQIF---DIEVFPQCERSQNTDIGNEKIHKFVASV 280
            LQ G+ N   D+ ++E   Q+     IEV    E  +N D+  +++HK   +V
Sbjct: 1794 LQYGIPNMKLDKKVVERRIQLMIDEGIEVLTNVEVGKNGDVSLDELHKVYDAV 1846


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 340 CGAYFHRTCLHMVYINFDYLSFYFPNCVL 426
           C   +H  CL+M  +  +   FY PNCVL
Sbjct: 143 CDDAYHTYCLNMDAVPIE--EFYCPNCVL 169


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 338 LVEHIFTGPAYIWFILILIIYHSIFLIV 421
           ++  I+  P Y  FI ++I+ H++ L++
Sbjct: 177 ILRQIYNHPLYNIFIFVVIVLHAVLLMI 204


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 256 DSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCL 369
           D + C+ICLC E  +      PL   L C   FH  C+
Sbjct: 494 DQRECTICLC-EYSE----ESPLYRELPCHHIFHPACI 526


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 451 RNIDEPVIYRFFLTSWSMSLNRTVYHIIKVSIV 549
           R++   V+   F + W MS  + +YH IKVS++
Sbjct: 526 RSLSSKVLEEAFSSYW-MSALKEMYHSIKVSMI 557


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 448 CRNIDEPVIYRFFLTSWSMSLNRTVYHIIK 537
           CR ++    Y F+L S  +S+ RT+ H IK
Sbjct: 320 CRRVE----YFFYLDSNPLSIQRTITHFIK 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 256 DSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCL 369
           D ++C +C C   PD   +  P C       Y H+ CL
Sbjct: 4   DDEICRVCRCEGAPD-SPLFHP-CKCTGSIRYVHQECL 39


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 38  DDRIWLHVEVTSEGLANNLHLIGQSEFWQNKLQDGLINWDHDRDIIENIS 187
           +D I   + V S    NN  LIG+    +  + +GL     D D+  N+S
Sbjct: 187 EDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRIIDDDVPANLS 236


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 56  HVEVTSEGLANNLHLIGQSEFWQNKLQDGLINWDHDRDIIENI 184
           +++++SE L    HLIG+S      L+     WD D   +++I
Sbjct: 373 NIQISSEYLQQ--HLIGESFDGNISLEPNSTEWDDDVSALQSI 413


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 161 DRDIIENISQIFDIEVFPQ 217
           D D+I NI Q++ + VF Q
Sbjct: 213 DTDVITNIDQVYPVGVFAQ 231


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 CFKLLIPLLCDTQFC*ETLTKRSKKID 476
           C KL IP++  + FC   LT R K ++
Sbjct: 192 CRKLSIPIIAYSPFCRGLLTGRIKTVE 218


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 134 QDGLINWDHDRDIIENISQIFDIEVFPQCERSQNTD 241
           +D L+ +  + + I+ +     IE+FP CE  +NTD
Sbjct: 195 RDSLVRYVSNENYIDRL-----IELFPLCEDLENTD 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,508
Number of Sequences: 5004
Number of extensions: 57296
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)