Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0723
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0168 + 20868696-20870072                                         33   0.27 
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    29   2.5  
08_02_1103 - 24329120-24329623                                         29   3.3  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    29   3.3  
11_04_0242 - 15273774-15274043,15274131-15274235                       29   4.4  
09_04_0521 - 18297343-18297840                                         28   5.9  
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    28   7.7  
03_05_0061 - 20366726-20366777,20366869-20366996,20368487-203687...    28   7.7  

>11_06_0168 + 20868696-20870072
          Length = 458

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 227 FFHIEEILQYQRFVKYFLLYLYHDPS**VHPVIYFARTQ 111
           FFH +  + Y +FV+ +++ L HDP    H  I FAR +
Sbjct: 217 FFHCKAFVFYDKFVRSYIVVLIHDP----HKQISFARLE 251


>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 101 IGQSEFWQNKLQDGLINWDHDRDIIENISQIFDIEVFPQCERSQNTDIGNEKIHKFVASV 280
           +G++   +   +D    WD D  I  ++   FD+E F  C  S+   +   K    +   
Sbjct: 152 LGKTSLARLVFEDKEEGWDFDLRIWIHVDDNFDLEKFAVCIISEANKLMKGKFSHILNRS 211

Query: 281 CVLNYLMFKVC 313
              +YL FK C
Sbjct: 212 DCPSYLKFKDC 222


>08_02_1103 - 24329120-24329623
          Length = 167

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 313 PQPLCSNLSCGAYFHRTCLHMVYINFDYLSFYFPNCVLCIGKFL 444
           P+ + + L CG  FHR CL   ++++D+ +     C LC  + L
Sbjct: 109 PESVVNRLPCGHLFHRACLEK-WLDYDHAT-----CPLCRHRLL 146


>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 268 CSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCL 369
           C +C  +E  D       LC+N +CG ++H  C+
Sbjct: 309 CFVCGELEPSDGPNAKVFLCNNATCGHFYHPRCV 342


>11_04_0242 - 15273774-15274043,15274131-15274235
          Length = 124

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 262 QVCSICLCVELPDVQGVPQPLCSNLSC 342
           Q+C++C C   P    +P P C  ++C
Sbjct: 74  QICAVCTCCGGPHGVCIPAPCCYAINC 100


>09_04_0521 - 18297343-18297840
          Length = 165

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 268 CSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMVYINFDYLSFYFPNCVLCIGKFL 444
           C +CL      V+   + + + L CG  FHR CL   ++++D+ +     C LC  + L
Sbjct: 103 CRVCL------VRFEAEAVVNRLPCGHIFHRACLE-TWLDYDHAT-----CPLCRSRLL 149


>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 317 WGTP*TSGNSTHKQMLQTCESFHCQCLYSDFFHIEEILQYQRFVKYFL 174
           WG    S NST  Q LQ  +  +  C + D F +  ++     +  FL
Sbjct: 25  WGLLRDSSNSTKLQHLQEWQEMYSPCFWMDAFALIHLIFIMSILVQFL 72


>03_05_0061 -
           20366726-20366777,20366869-20366996,20368487-20368715,
           20368943-20369016
          Length = 160

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 317 WGTP*TSGNSTHKQMLQTCESFHCQCLYSDFFHIEEILQYQRF 189
           W +  TSG+ T  + + TCE+   Q + S F  I   +Q  +F
Sbjct: 97  WKSEATSGHETEIKAICTCETMEHQGVASLFVQIAPAMQLYKF 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,222
Number of Sequences: 37544
Number of extensions: 302729
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)