Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0723
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 337 INCCIKAGAHLEHQVIQHTNRCYKLVNLFIANVCI 233
           +N  +  G  L    + HT++   + N+FI ++ +
Sbjct: 75  VNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAV 109


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/50 (26%), Positives = 17/50 (34%)
 Frame = +1

Query: 382 INFDYLSFYFPNCVLCIGKFLICRNIDEPVIYRFFLTSWSMSLNRTVYHI 531
           +N D L  YF  C   I   +   N    +  R       M+  R  Y I
Sbjct: 456 VNIDKLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKI 505


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/50 (26%), Positives = 17/50 (34%)
 Frame = +1

Query: 382 INFDYLSFYFPNCVLCIGKFLICRNIDEPVIYRFFLTSWSMSLNRTVYHI 531
           +N D L  YF  C   I   +   N    +  R       M+  R  Y I
Sbjct: 456 VNIDKLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKI 505


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 223 KKSEYRHWQ*KDSQVCSIC 279
           +  E +H+Q  +S VC++C
Sbjct: 389 RHKEQQHFQPLNSAVCALC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,293
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)