Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0718
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 77 2e-15
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 7e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.005
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.005
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 35 0.006
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.006
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 34 0.014
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.019
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.033
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.057
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.057
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.075
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.17
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.30
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.30
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.70
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 0.70
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 0.92
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 0.92
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.2
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 1.2
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.6
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 1.6
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 2.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 2.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 2.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 3.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 4.9
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 6.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 6.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 6.5
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 8.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 8.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 77.0 bits (181), Expect = 2e-15
Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 5/83 (6%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-----GKIFVG 435
V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R K+FVG
Sbjct: 194 VMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVG 252
Query: 436 GLSSEISDDEIRNFFSEFGTILE 504
G+ + +++E RNFF++FG +L+
Sbjct: 253 GVPGDCTEEEFRNFFNQFGRVLD 275
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTXKELRD 235
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETT LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 236 HFGAYGE 256
+F +GE
Sbjct: 182 YFEQFGE 188
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/29 (48%), Positives = 24/29 (82%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GGL+ E +DD +R++F +FG +L+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLD 191
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYG 253
K+FVGG+ + T +E R+ F +G
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFG 271
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 7e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +1
Query: 238 FWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 393
F SI + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 394 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
P K G +F+ L I + + + FS FG IL
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195
Score = 28.7 bits (61), Expect = 0.53
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
I S + TD G+S+GF F+ + PE +K +
Sbjct: 390 ITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 83 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE*R 262
I ++ +G S ++ ++ LFVG L +ETT +L++HFG G+ R
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 238 FWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 372
F + I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 375
I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 392 IQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 29.9 bits (64), Expect = 0.23
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 393
I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+
Sbjct: 289 IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
+FVG LS + D + F E+GTI+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIV 290
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +1
Query: 343 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTV 127
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.006
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 394 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
P+ A + +FVGGLS +S++E++ F FG I+
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIV 330
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 259 ESINVKTDPNTGRSRGFAFIVF 324
+S + TDP T SRG+ F+ F
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRF 235
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.9 bits (74), Expect = 0.014
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 364 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
E TI K + K + + G ++VG L + ++R +FS+FG +L
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVL 132
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.019
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 373 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 DHNSAEAPGR--DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+++ PG+ D+ ++VG + + +E+ HF YG+
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQ 42
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 283 PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 402
PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 419 PNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.033
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 366
I+ + + DP T +GFA+I FK +DK + E
Sbjct: 296 IDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.9 bits (69), Expect = 0.057
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 414
+ SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.9 bits (69), Expect = 0.057
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTI 498
+I+VGGLSS I ++ + FS FG++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSV 31
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.5 bits (68), Expect = 0.075
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 423
+ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ + GK
Sbjct: 118 VPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 149 SAEAPGRDDDRK--LFVGGLSWETTXKELRDHFGAYGE 256
S G+++DRK LFVG L +++ + L+ HF G+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQ 117
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.3 bits (65), Expect = 0.17
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
+FVGGL+S +S+ +++ F FG IL
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRIL 324
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.30
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 390
V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 36 VVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+FV L+ + D++ NFFS+ G I
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPI 31
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.30
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 415 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
H ++FVG L ++++D+ + FSE+ ++++
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVK 58
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.70
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 388 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 0.70
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 334 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTV 70
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 131 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTXKELRDHFGAYG 253
D+ H SAE P + DD ++FVG LS T E+R F G
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVG 68
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 304 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 402
G AF+ F E +DK + T+N K +D ++
Sbjct: 90 GIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 0.92
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 265 INVKTDPNTGRSRGFAFIVFKAPES 339
IN+ D TG+S+GFAF+ ++ S
Sbjct: 60 INLVRDKETGKSKGFAFLKYEDQRS 84
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFG 492
I++G L ++++D+I FSEFG
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFG 55
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFK 327
IE I V + TG+S G+AF+VF+
Sbjct: 126 IERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 301 RGFAFIVFKAPESIDKVMAAGEHTINNKK 387
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 185 LFVGGLSWETTXKELRDHFGAYGE*R-VLM*RQIQTQ 292
LF+ LS++ T +E+ D FG YG R + + +QT+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR 50
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 192 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 79
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 167 RDDDRKLFVGGLSWETTXKELRDHFGAYG 253
RDD L V LS +T +ELRD F +G
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFG 226
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF 324
I+ + + D TGR++GFAF+ +
Sbjct: 228 IQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 173 DDRKLFVGGLSWETTXKELRDHFGAYG 253
D + ++VG + + T +EL+ HF + G
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCG 79
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 140 DHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
D+N + G + ++FV +S T ++LR HF ++GE
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGE 119
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDK 348
I S V D TG S +AFI F ES++K
Sbjct: 270 IISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+F+G L S + EI F +FG I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 287 FGSVFTLILSIHRMLQNDHGAPYXW 213
FGS L+ IH + N GA + W
Sbjct: 148 FGSKENLLSKIHELASNSFGACWLW 172
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
++V L I+ E+R++F FG IL
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEIL 203
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 176 DRKLFVGGLSWETTXKELRDHFGAYGE 256
+ +LFVG + + T +++ D F YG+
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQ 29
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
++FVG + + + +++ +FF +G IL+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILD 32
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -1
Query: 401 FFGSTFLLLMVCSPAAMTLSIDSGALNTMKANPRDLPVFGSVFTLILSIHRMLQNDHGAP 222
F+G T LL+ + A++ S L + +P D F SV + + L + P
Sbjct: 187 FWGGTHLLMQLKKYASLEQSSHESQLYLVNPSPEDTVAFQSVELQKVISNNRLNSSSTPP 246
Query: 221 YXWSPSS 201
S SS
Sbjct: 247 TPRSSSS 253
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 292 GRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 384
G S+GF F FK P + ++ G+ T NK
Sbjct: 348 GSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,861
Number of Sequences: 5004
Number of extensions: 39970
Number of successful extensions: 193
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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