Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0716
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    28   0.52 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   0.91 
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   3.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.4  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   6.4  

>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 29  TEIGSQRDLLIECNRDTSRFNAVLWSRVMCYGDQKE*EFSHGLR*TARI--ISSTGARTR 202
           ++IG+  D      R  +RF+ +LW++   Y  +    F+   + T RI  IS   +   
Sbjct: 315 SDIGNWLDATKRYFRTGARFDEILWAKTCMYFTRGSLTFAEAYKRTGRILNISVIPSDVH 374

Query: 203 SPTMLI 220
           SP  LI
Sbjct: 375 SPPKLI 380


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 288 YTGPRASPGVYP*ARIFLVEVTVINMVG 205
           Y  PR  PG  P  RI  +EV V +MVG
Sbjct: 569 YGHPRMHPGETPYRRIEDIEVVVFDMVG 596


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 10  PDPAINYRDWL 42
           PDP ++YRDW+
Sbjct: 89  PDPNVSYRDWI 99


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 176 ISSTGARTRSPTMLITVTSTRK 241
           I+STGA T + T   TVTST++
Sbjct: 235 ITSTGASTVTSTQPSTVTSTQR 256


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 344 FSSLEEKSWCTFTTKCWSYCSL 409
           FS   E +WC  T   WS+  L
Sbjct: 68  FSKWVELAWCFLTLATWSFMKL 89


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 332 RGKRFSSLEEKSWCTFTTKCWSY 400
           +G RF++++++    +TTK WS+
Sbjct: 42  QGTRFNAVKKEIGSYYTTKIWSF 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,090
Number of Sequences: 5004
Number of extensions: 29903
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)