Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0716
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.51 
12_01_0436 - 3436886-3437559,3438738-3438924                           29   1.2  
10_08_0852 + 21073620-21074279,21074323-21074748                       29   2.0  
12_02_0406 - 18648414-18648809,18650049-18650180,18650959-186510...    28   2.7  
06_03_0078 + 16291254-16291532,16291654-16291725                       28   2.7  
09_03_0135 - 12654034-12654324                                         28   3.6  
05_04_0014 + 17171565-17172102,17172927-17173093                       28   3.6  
03_02_0506 + 8992893-8993669                                           28   3.6  
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     28   3.6  
02_01_0011 + 78277-78487,78594-79417                                   28   3.6  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           27   4.7  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 297 SSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGAIARSQA 416
           SSK   P      G   H  KK+P   + P AG++ RS+A
Sbjct: 7   SSKGVAPSPSTGEGGESHTSKKNPAPATAPTAGSVTRSRA 46


>12_01_0436 - 3436886-3437559,3438738-3438924
          Length = 286

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 285 CNKLSSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGAIARSQAPS 422
           C++L++ +  P   A    G+ P   SPG HSP +A A    + PS
Sbjct: 44  CSELAAAAAAPSPAAPFPAGYVP---SPGQHSPASAAAGDEEELPS 86


>10_08_0852 + 21073620-21074279,21074323-21074748
          Length = 361

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 351 PWKKSPGAHSPPNAGAIAR 407
           PW   P   SPP AGA+AR
Sbjct: 54  PWLMLPERESPPGAGAVAR 72


>12_02_0406 -
           18648414-18648809,18650049-18650180,18650959-18651065,
           18652979-18653183
          Length = 279

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 249 LTGTXLAMLAAQCNKLSSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGAIA 404
           LT    A  A++     S  PP  + A + +G   WK +  + SP   G ++
Sbjct: 213 LTRPAAAAAASEIGTACSIGPPSASAATLRRGMESWKYTRSSTSPSACGEVS 264


>06_03_0078 + 16291254-16291532,16291654-16291725
          Length = 116

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 264 LAMLAAQCNKLSSKSPPPLADAAVGKGFHPWKKSPG 371
           L+       + ++ SPPP +  A  +GF  W  +PG
Sbjct: 42  LSSTTTTTTRFAAWSPPPPSGGARSRGFAAWASAPG 77


>09_03_0135 - 12654034-12654324
          Length = 96

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 312 PPLADAAVGKGFHPWKKSPGAHSPPNAG 395
           P + DAAV   +HP   SPG    P  G
Sbjct: 63  PAVGDAAVDNSYHPMDCSPGCFIDPLIG 90


>05_04_0014 + 17171565-17172102,17172927-17173093
          Length = 234

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297 SSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGA 398
           SS  PPPL  + +      W  S  + +PP AGA
Sbjct: 164 SSSLPPPLEPSLLRLRGPVWHSSSSSSTPPGAGA 197


>03_02_0506 + 8992893-8993669
          Length = 258

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276 AAQCNKLSSKSPPPLADAAVGK-GFHPWKKSPGAHSPPNAGAIARSQAPS 422
           A   N+    SPPP   +A G  G  P  + PG+ + P    +   ++P+
Sbjct: 21  AGGSNEEEEASPPPGGGSATGSAGRRPRGRPPGSKNKPKPPVVVTRESPN 70


>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   DRTRTPQLTTEIGSQRDLLIECNRDTSRF 88
           + TRTPQ  T  G   +L+I    DTS++
Sbjct: 111 NHTRTPQPDTRTGCHANLVIRRKNDTSKY 139


>02_01_0011 + 78277-78487,78594-79417
          Length = 344

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 255 GTXLAMLAAQCNKLSSKSPPPLADAAVGKGFHPWKKS 365
           GT L  ++  CN L+S    P++D      +HP +K+
Sbjct: 289 GTGLLEVSVLCNALTSSVCTPVSDYLFWDSYHPTEKA 325


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 172 TRSSSQPMREFLFLLITVTHHTRPQHSVKSRSISITLD 59
           T ++SQP   ++ LL  ++  + P  +V SRS S T+D
Sbjct: 518 TPTTSQPSTAWMPLLGRISFRSAPPSAVGSRSPSFTID 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,872,646
Number of Sequences: 37544
Number of extensions: 226143
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)