Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0716
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 46 2e-05
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_43732| Best HMM Match : Rop (HMM E-Value=6.5) 29 2.1
SB_46916| Best HMM Match : Rop (HMM E-Value=5.3) 29 2.1
SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_26041| Best HMM Match : Rop (HMM E-Value=2.3) 29 2.1
SB_25786| Best HMM Match : Rop (HMM E-Value=6.5) 29 2.1
SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9) 28 2.8
SB_43733| Best HMM Match : Rop (HMM E-Value=6.2) 27 4.8
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_19401| Best HMM Match : Rop (HMM E-Value=3) 27 4.8
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61) 27 4.8
SB_22430| Best HMM Match : DUF498 (HMM E-Value=3.7) 27 4.8
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048) 27 4.8
SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14) 27 4.8
SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19) 27 6.4
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_2526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13) 27 8.5
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34361| Best HMM Match : Rop (HMM E-Value=2.3) 27 8.5
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 45.6 bits (103), Expect = 2e-05
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 270 MLAAQCNKLSSKSPPPLADAAVGKGFHPWKKSPGAHS 380
MLAA C+++ + PP+AD KGF+PWK P S
Sbjct: 1 MLAATCSRIGHQQSPPVADVTTAKGFYPWKSPPHLES 37
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 417 EPVSEQ*LQHLVVNVHQDFSSRDENLFPRQHLLAEAEIYLTICYTGPRASPGVYP*ARIF 238
E V EQ QH +V Q S+ + L ++Y Y G GVYP ++F
Sbjct: 711 ERVQEQRKQHALVEQQQQRFSQHPYMVLHDGLAYPPQLYAAQVYPGQDPRFGVYPYPQMF 770
Query: 237 LVEV 226
+V
Sbjct: 771 AQQV 774
>SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)
Length = 294
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT K WS
Sbjct: 117 FQGLFNKTWCQFTKKMWS 134
>SB_46916| Best HMM Match : Rop (HMM E-Value=5.3)
Length = 373
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT K WS
Sbjct: 194 FQGLFNKTWCQFTKKMWS 211
>SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT K WS
Sbjct: 148 FQGLFNKTWCQFTKKMWS 165
>SB_26041| Best HMM Match : Rop (HMM E-Value=2.3)
Length = 230
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT K WS
Sbjct: 148 FQGLFNKTWCQFTKKMWS 165
>SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)
Length = 294
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT K WS
Sbjct: 117 FQGLFNKTWCQFTKKMWS 134
>SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)
Length = 108
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 114 ITRDHNTALNREVSRLHSISKSRCEPISVVNC-GVRV 7
++R H ++R SR H ++ SRC ++V C GV V
Sbjct: 42 VSRCHGVTVSR-CSRCHGVTVSRCHGVTVSRCHGVTV 77
>SB_43733| Best HMM Match : Rop (HMM E-Value=6.2)
Length = 412
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT + WS
Sbjct: 117 FQGLFNKTWCQFTKRSWS 134
>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 299 GRKTIVHSDHKPLEMIVRKPLHK 321
>SB_19401| Best HMM Match : Rop (HMM E-Value=3)
Length = 451
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT + WS
Sbjct: 148 FQGLFNKTWCQFTKRSWS 165
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 390 GRKTIVHSDHKPLEMIVRKPLHK 412
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 635 GRKTIVHSDHKPLEMIVRKPLHK 657
>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 291 GRKTIVHSDHKPLEMIVRKPLHK 313
>SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61)
Length = 604
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L K+WC FT + WS
Sbjct: 361 FQGLFNKTWCQFTKRSWS 378
>SB_22430| Best HMM Match : DUF498 (HMM E-Value=3.7)
Length = 214
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 34 GRKTIVHSDHKPLEMIVRKPLHK 56
>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
Length = 1347
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 247 GRKTIVHSDHKPLEMIVRKPLHK 269
>SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14)
Length = 713
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 178 GRKTIVHSDHKPLEMIVRKPLHK 200
>SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19)
Length = 429
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE+++ LH+
Sbjct: 309 GRKTIVHSDHKPLEMVVRKPLHK 331
>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 333 VGKGFHPWKKSPGAHSPPNAGAIARSQAP 419
+ K F PWK S +G++ARS +P
Sbjct: 122 IQKSFEPWKHSTVQRRASLSGSLARSPSP 150
>SB_2526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 318 AEAEIYLTICYTGPRASPG 262
+E E+YL IC+T SPG
Sbjct: 34 SEVELYLDICHTSNSCSPG 52
>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 637
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 355 GRKVLVHIHHQMLELLLAHRLHR 423
GRK +VH H+ LE++ LH+
Sbjct: 360 GRKTIVHSDHKPLEMIARKPLHK 382
>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 323 RCCRGKRFSSLEEKSWCTFTTKCWSYCSLTGSI 421
RC ++ W T+ KCW C +T ++
Sbjct: 466 RCALSEQLDPARRVYWDTWRGKCWGSCVVTCTV 498
>SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 326 CCRGKRFSSLEEKSWCTFTTKCWSYCSLTGSI 421
C R ++ E+S+ F T C YC + G I
Sbjct: 226 CTRVRKNHVFYEESFVPFPTHCVGYCLIAGKI 257
>SB_34361| Best HMM Match : Rop (HMM E-Value=2.3)
Length = 242
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 344 FSSLEEKSWCTFTTKCWS 397
F L +WC FT K WS
Sbjct: 148 FQGLFNNTWCQFTKKMWS 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,262
Number of Sequences: 59808
Number of extensions: 234108
Number of successful extensions: 575
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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