Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0716
         (423 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1364|AAF46519.2|  691|Drosophila melanogaster CG1343-PA...    86   2e-17
X77050-1|CAA54342.1|  260|Drosophila melanogaster gag-like polyp...    28   5.9  
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    28   5.9  
AY071333-1|AAL48955.1|  602|Drosophila melanogaster RE35228p pro...    27   7.8  
AY060926-1|AAL28474.1|  602|Drosophila melanogaster GM06687p pro...    27   7.8  
AE014298-1569|AAF48009.1|  602|Drosophila melanogaster CG1908-PA...    27   7.8  

>AE014298-1364|AAF46519.2|  691|Drosophila melanogaster CG1343-PA,
           isoform A protein.
          Length = 691

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/50 (76%), Positives = 44/50 (88%)
 Frame = +3

Query: 249 LTGTXLAMLAAQCNKLSSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGA 398
           L GT LAMLAAQCNKLS+KSPPPLADAAVGKGFHPWKKSP + +  ++G+
Sbjct: 19  LRGTPLAMLAAQCNKLSNKSPPPLADAAVGKGFHPWKKSPNSPAAGSSGS 68


>X77050-1|CAA54342.1|  260|Drosophila melanogaster gag-like
           polypeptide protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 6   GPGPRN*LPRLAHSEIYLSSVI 71
           GP PRN  PRL HS   LS  I
Sbjct: 55  GPPPRNNTPRLPHSSAILSKSI 76


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 6   GPGPRN*LPRLAHSEIYLSSVI 71
           GP PRN  PRL HS   LS  I
Sbjct: 738 GPPPRNNTPRLPHSSAILSKSI 759


>AY071333-1|AAL48955.1|  602|Drosophila melanogaster RE35228p
           protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 240 KSELTGTXLAMLAAQCNKLSSKSPPPLA--DAAVGKGFHPWKKSPGAHSPP-NAGAIARS 410
           KS+L    L    A+   +S  SPPPLA     V         SP A SPP N   +A+S
Sbjct: 213 KSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQS 272

Query: 411 Q 413
           +
Sbjct: 273 R 273


>AY060926-1|AAL28474.1|  602|Drosophila melanogaster GM06687p
           protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 240 KSELTGTXLAMLAAQCNKLSSKSPPPLA--DAAVGKGFHPWKKSPGAHSPP-NAGAIARS 410
           KS+L    L    A+   +S  SPPPLA     V         SP A SPP N   +A+S
Sbjct: 213 KSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQS 272

Query: 411 Q 413
           +
Sbjct: 273 R 273


>AE014298-1569|AAF48009.1|  602|Drosophila melanogaster CG1908-PA
           protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 240 KSELTGTXLAMLAAQCNKLSSKSPPPLA--DAAVGKGFHPWKKSPGAHSPP-NAGAIARS 410
           KS+L    L    A+   +S  SPPPLA     V         SP A SPP N   +A+S
Sbjct: 213 KSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQS 272

Query: 411 Q 413
           +
Sbjct: 273 R 273


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,395,742
Number of Sequences: 53049
Number of extensions: 363799
Number of successful extensions: 1145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)