Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0716
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    27   5.5  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    26   9.7  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    26   9.7  

>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 41  SQRDLLIECNRDTSRFNAVLWSRVMCYGDQKE 136
           +++DL+ EC   T    A+L    MC  D+KE
Sbjct: 626 NEKDLIFECGPWTCFGEAILEKMEMCISDRKE 657


>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 393 QHLVVNVHQDFSSRDENLFPRQHLLAEAEIYLTI-CYTGPRAS 268
           +HL VN  Q  SSRD NLF ++ +  E +   ++ C+ G  AS
Sbjct: 178 EHLHVN--QKMSSRDLNLFLKRWMRGEYKSLKSLRCHVGSEAS 218


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 351  PWKKSPGAHSPPNAGAIARSQAPS 422
            PW  +P  H+PP A A A  +AP+
Sbjct: 1299 PWNTTPQYHAPPGAQA-AAPEAPA 1321


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 351  PWKKSPGAHSPPNAGAIARSQAPS 422
            PW  +P  H+PP A A A  +AP+
Sbjct: 1319 PWNTTPQYHAPPGAQA-AAPEAPA 1341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,596,740
Number of Sequences: 27780
Number of extensions: 176475
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)