Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0716
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   10.0 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   10.0 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   10.0 

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 409 ERAIAPAFGGECAPG 365
           E   A  F G CAPG
Sbjct: 523 ENEAADFFSGSCAPG 537


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 409 ERAIAPAFGGECAPG 365
           E   A  F G CAPG
Sbjct: 523 ENEAADFFSGSCAPG 537


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +1

Query: 91  RCVVVACDVLR*SEGIRILSWAEMN 165
           + V + CD+   ++ ++++ W E N
Sbjct: 57  KLVPLQCDLSNQNDILKVIEWVEKN 81


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 409 ERAIAPAFGGECAPG 365
           E   A  F G CAPG
Sbjct: 523 ENEAADFFSGSCAPG 537


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 57 LSSVIEILLDLTL 95
          +SSV E+L+D TL
Sbjct: 47 ISSVSEVLMDFTL 59


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +3

Query: 309 PPPLADAAVGKGFHPWKKSPGAHSPPNAG 395
           PP +  A      HP +   G   PP  G
Sbjct: 110 PPEIQRALEWNAAHPEEDDGGQPRPPGRG 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 122  RNTSHATTTQR*IEKYLDYT 63
            R TS  TT    + KY +YT
Sbjct: 1168 RKTSALTTVLTGLRKYTNYT 1187


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 122  RNTSHATTTQR*IEKYLDYT 63
            R TS  TT    + KY +YT
Sbjct: 1164 RKTSALTTVLTGLRKYTNYT 1183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,815
Number of Sequences: 438
Number of extensions: 2000
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)