Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0715
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.13
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.29
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 30 0.39
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.51
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 29 0.68
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.1
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 2.7
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 27 2.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.7
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 27 2.7
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 4.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 4.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 6.3
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 26 6.3
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 31.5 bits (68), Expect = 0.13
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 316 LDLYGSEANAVMVNPNSVMPSNFAETP---VKSVVKEE-ASNVLLSSVANRDSESKHNST 483
L LYG++A NP+SV+PSN + TP K+V KE N S D+ S S
Sbjct: 173 LSLYGNQA----FNPSSVLPSNSSSTPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSN 228
Query: 484 LASP 495
L P
Sbjct: 229 LYMP 232
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 331 SEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNST 483
SE ++ +++ +S +PS + TP S++ ++VL SS + S S S+
Sbjct: 505 SEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 489 QSKRRKNHLTFSPNTI-KVSKVHENRGNKNKKGTRRGEGRWYLRKNKTTK 635
+ +R H P + KV K+ EN GNK+ + E + +K K+ K
Sbjct: 162 KEERSSFHFRVKPKNLDKVPKLAENEGNKSLESKESNENKVVFKKKKSGK 211
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 385 AETPVKSVVKEEASNVLLSSVANRDSESKHNS 480
AE+ V+S K + S LSS N+DSE N+
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEKNDNN 507
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSN 381
A + D ++C WLN+ SFV Y S N ++ + +P N
Sbjct: 107 AFTIEKDNNSC-VWLNSVKSFVEKQFSYSSGTNGILATFLTAIPPN 151
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 465 IETQFNASQSKRRKNHLTFSPNTIKVSKVHENRGNKN-KKGTRRGEGRWYLRKNKT 629
++ N+ S +R L N +++ +EN GN + KKG E LRKN T
Sbjct: 657 LKAHMNSISSPKRHFSLRHKKNASQITN-NENNGNDDIKKGDEPEEEHVGLRKNST 711
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 349 MVNPNSVMPSNF-AETPVKSVVKEEASNVLLSSVANRDSESKH 474
++ P P+ F A TP V S+V LSS++N +S H
Sbjct: 453 LIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPH 495
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 337 ANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTL 486
A ++N N+ P F VK + +EE VLL+S+ N + N L
Sbjct: 71 AEGTLLNANT--PQEFTNADVKKI-REEIGEVLLNSIKNGVVSERPNELL 117
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 425 DASSLTTLFTGVSAKFEGITEFGFTITALAS 333
DAS T+FT +S +G T G+TI++ +S
Sbjct: 739 DASGFNTIFTSISQSSDGETS-GYTISSNSS 768
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -1
Query: 428 FDASSLTTLFTGVSAKFEGITEFGFTITALASDPYKSKL*TKLELLFSHVEQLSVSMSVT 249
FDAS T+++ G A F + ASD S + K FS S S S+
Sbjct: 847 FDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTI-AKPTFKFSTSNSGSTSYSIP 905
Query: 248 VACRKN 231
+ +N
Sbjct: 906 SSSSRN 911
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 364 SVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKIT 513
SV AE P ++ + L++S+A R++E NST S + IT
Sbjct: 221 SVRKRLMAEVPYGVLLSGGLDSSLIASIAARETEKLANSTSQSEEARTIT 270
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 307 VHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS----SVANRDSE-SK 471
+ N + ++N + N NS ++ +PV + + SNVL S SV + D+E S+
Sbjct: 136 ISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTGRTSVLHIDAEQSQ 195
Query: 472 HNSTLASPKEEKIT 513
N+T+ K++ ++
Sbjct: 196 TNNTVTPLKDDALS 209
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 247 TVTDMDTDNCSTWLNNSSSF 306
T+TD + D TW+ NSS F
Sbjct: 216 TLTDDNDDGIITWIQNSSDF 235
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 290 FSHVEQLSVSMSVTVACRKNLYQTNLENLI 201
+ H+E+ +S+ ++V KNL N EN++
Sbjct: 657 YCHMEETQLSLYLSVLELKNLVNANRENIL 686
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 623 QNDQDCSPKVLLKGLDKSKSIPQCRTLRS 709
QN PK+L+ GL+ S+ CR L+S
Sbjct: 301 QNLDFSQPKLLVSGLESKISLYDCRFLQS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,496
Number of Sequences: 5004
Number of extensions: 57428
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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