Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0715
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    29   2.8  
02_02_0572 + 11667455-11670783,11672026-11672419                       29   5.0  
05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559     28   6.6  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    28   6.6  

>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +1

Query: 262 DTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS 441
           DT+N  T  N+    +   D     +N     PN+ + S   +  +  VV++  SN +L 
Sbjct: 268 DTNNTDTERNSGQLQLQMQDQLNMVSNDHQTIPNNAVSSELMQCEMSEVVRDGCSNNILE 327

Query: 442 SVANRDSESKHNS---TLASPKEEKIT*HFLQTQLKS 543
                  + ++++    L  P E   + HFL  +L++
Sbjct: 328 DEIQMLMDCQNSNCQLNLQGPDEPCHSWHFLCEELQN 364


>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 110 CSDMDLYITDSLQDMLDIDIKNEIATDLSSISDFQDSFGTNFSDMPPLPTWTLIIALRG* 289
           CS+++ +I   + D +  +   E+  D +S++DF      N +D+P     TL+  +   
Sbjct: 28  CSELETHI--GVGDKVLAEFITELGRDSASVADFDTKLKANGADLPDYFVRTLLTIIHAI 85

Query: 290 ITVP 301
           +  P
Sbjct: 86  LPPP 89


>05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559
          Length = 387

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +1

Query: 379 NFAETPVKSVVKEEASNVL-----LSSVANRDSESKHNSTLA 489
           +F   P K +++++AS+ +     LS   +RDSES HN   A
Sbjct: 133 DFVMVPPKGLLRDKASDAMVHRGWLSMYTSRDSESSHNKDSA 174


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 313 NLDLYGSEANAVMV-NPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLA 489
           ++D+  +E   V   N   V+P +F+ TP K  +K+  S   LS     + E   N +  
Sbjct: 590 DIDILNNEVTPVFNHNEKYVVPDSFSPTPAKQAIKKLISTKNLSQTLEDNIEDCVNCSDN 649

Query: 490 SPKE 501
             KE
Sbjct: 650 EDKE 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,808
Number of Sequences: 37544
Number of extensions: 323818
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)