Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0715
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    29   3.4  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 179 IATDLSSISDFQDSFGTNFSDMPPLPTWTLIIA 277
           IAT LS ISD  D F  + + + P+  WTL  A
Sbjct: 461 IATSLSLISDLNDWFEQHSNLLEPVVRWTLQFA 493


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 92  SNKYSWCSDMDLYITDSLQDMLDIDIKNEIATDLSSISDF 211
           SN+ SWC  +       + +  +I  K  IA  ++S+SDF
Sbjct: 250 SNRSSWCKHVVALSIYRIYERSNIKFKETIADAINSMSDF 289


>AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical
           protein ZK484.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 385 AETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEK 507
           AE PVK VVK++A +    +  N  S S  ++  A+ K++K
Sbjct: 216 AEQPVKKVVKKKAISKKPPTTTNVTSTSDSSAAAAAAKKKK 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,657
Number of Sequences: 27780
Number of extensions: 314224
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)