Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0715
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.0  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 421 ASNVLLSSVANRDSESKHNSTLASPKEEKIT*HFLQTQLK 540
           A N    +V N+D    H  T+ +  E K+T  F   +LK
Sbjct: 377 AGNYTCHAVRNQDVVQTHVLTIHTIPEVKVTPRFQAKRLK 416


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 19  TLQQIIDVDEKNQILT 34


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 87  TLQQIIDVDEKNQILT 102


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           +LQ ++D+D KN+I T
Sbjct: 87  TLQQIIDVDEKNQILT 102


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 489 QSKRRKNHLTFSPNTIKVSKVHENRGNKNKKGTRRGEG 602
           Q+  R+N    + N    +K + NR N NK+   R  G
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNG 497


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 262 DTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMP 375
           DT  CS  + + S    +L    +  + ++VNP   +P
Sbjct: 142 DTQICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELP 179


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 465 IETQFNASQSKRRKNHLTFSPNTIKVSKVHENRGNKNKKGTR 590
           I+  +N + +   +N  ++    +K   V +  GN N+K TR
Sbjct: 44  IDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTR 85


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 140 SLQDMLDIDIKNEIAT 187
           SL  ++D+D KN+I T
Sbjct: 38  SLHHIIDVDEKNQILT 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,412
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)