Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0713
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1IEF9 Cluster: Putative transcriptional regulator, Tet...    37   0.48 
UniRef50_UPI0000E49DE6 Cluster: PREDICTED: hypothetical protein;...    36   0.63 
UniRef50_Q1MSZ4 Cluster: Novel protein; n=15; Clupeocephala|Rep:...    34   2.6  
UniRef50_P60353 Cluster: tRNA pseudouridine synthase A; n=2; Spi...    34   3.4  
UniRef50_Q4TFJ3 Cluster: Chromosome undetermined SCAF4433, whole...    33   4.5  
UniRef50_UPI000066105E Cluster: Homolog of Homo sapiens "PGBD3 p...    33   5.9  
UniRef50_Q6AZZ1 Cluster: Tripartite motif-containing protein 68;...    33   7.8  

>UniRef50_A1IEF9 Cluster: Putative transcriptional regulator, TetR
           family; n=1; Candidatus Desulfococcus oleovorans
           Hxd3|Rep: Putative transcriptional regulator, TetR
           family - Candidatus Desulfococcus oleovorans Hxd3
          Length = 206

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
 Frame = -2

Query: 350 YDFFP--EELFSEICEYTSMYSVQESGRSLNVSIEKCA---------HL*RSNFLWALQH 204
           Y++F   ++LF  + +Y     VQESG +   ++EK A          L  +   W +QH
Sbjct: 47  YEYFKSKDDLFFAVFQYV----VQESGDTAEAALEKAAGKTAALRLTALNSAIVSWIVQH 102

Query: 203 FHHIWVLRLEKKDNTIHEXPESGVLKIWYEPEHLGLFIEMKRISGNYPVSGLSGHVF 33
             H++ L +E    T+   PE   +++  E E   ++   +RI G     G++G VF
Sbjct: 103 -RHLYTLSMEFWAATVSASPE---MRVRMEKEFKNIYERFRRIVGGIIQEGVAGGVF 155


>UniRef50_UPI0000E49DE6 Cluster: PREDICTED: hypothetical protein;
           n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 644

 Score = 36.3 bits (80), Expect = 0.63
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = -2

Query: 362 LDYFYDFFPEELFSEICEYTSMYSVQ 285
           +D+FY FFPE+LF+ + E T++Y+ Q
Sbjct: 163 VDFFYRFFPEDLFTMLAEQTNLYARQ 188


>UniRef50_Q1MSZ4 Cluster: Novel protein; n=15; Clupeocephala|Rep:
           Novel protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 365

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 368 TALDYFYDFFPEELFSEICEYTSMYSVQESGRSLNVSIEKCAH 240
           T LDYF  +   +L   I E ++  S+ +SG  LNV+ ++  H
Sbjct: 215 TPLDYFEQYMDRDLMMTIAECSNAMSLSKSGEPLNVTTDEIYH 257


>UniRef50_P60353 Cluster: tRNA pseudouridine synthase A; n=2;
           Spiroplasma|Rep: tRNA pseudouridine synthase A -
           Spiroplasma kunkelii
          Length = 260

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 194 IWVLRLEKKDNTIHEXPESGVLKIWYEPEHLGLFIEMKRISGNYPVS-GLSGHVF 33
           IW L   K D  +H   +  ++K+ ++P HL  FI  K +S   P +  + G+ F
Sbjct: 43  IWTLGASKTDAGVHACDQKVLVKLTFQPRHLAFFI--KTVSQTLPPNINIKGYQF 95


>UniRef50_Q4TFJ3 Cluster: Chromosome undetermined SCAF4433, whole
           genome shotgun sequence; n=2; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF4433,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 168

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = -2

Query: 524 NEENSRTKPHNQARHAVRKKQLNLNFKWTTGRFQHRADIENDKFFHPIPDVKTA---LDY 354
           ++E   +KP +++ +A  +++      W     Q+ A  E   +   +PD +T    + Y
Sbjct: 46  SDEEHTSKPADESSNATTQRKRR-KVAWKPVEQQNSAK-EVPVWQDALPDSETIRRPIQY 103

Query: 353 FYDFFPEELFSEICEYTSMYSVQES 279
           F DFF  +L  +I E +++Y  Q+S
Sbjct: 104 FQDFFDGKLLDKIVEQSNLYYTQQS 128


>UniRef50_UPI000066105E Cluster: Homolog of Homo sapiens "PGBD3
           protein; n=1; Takifugu rubripes|Rep: Homolog of Homo
           sapiens "PGBD3 protein - Takifugu rubripes
          Length = 357

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 168 RQYNPRXPRKWGFKNLVRAGASGVIY 91
           R Y P  P KW FK   RAG SG +Y
Sbjct: 141 RVYMPAKPHKWSFKMWGRAGQSGFLY 166


>UniRef50_Q6AZZ1 Cluster: Tripartite motif-containing protein 68;
           n=13; Eutheria|Rep: Tripartite motif-containing protein
           68 - Homo sapiens (Human)
          Length = 485

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 212 LQHFHHIWVLRLEKKDNTIHEXPESGVLKIWYEPEHLGLFIEMKRIS-GNYPVSGLSGHV 36
           L   +  WV+RL K +       E  +L +   P  +G+F++ +      Y V+    H+
Sbjct: 387 LSPHYGFWVIRLRKGNEYRAGTDEYPILSLPVPPRRVGIFVDYEAHDISFYNVTDCGSHI 446

Query: 35  FTI-RYP 18
           FT  RYP
Sbjct: 447 FTFPRYP 453


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,048,560
Number of Sequences: 1657284
Number of extensions: 12969550
Number of successful extensions: 28138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28136
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)