Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0713
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   3.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   4.0  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    26   5.3  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 335 LEKSRRNNLGPSLHQVLGGKT 397
           +EK   N +GP+LH V G KT
Sbjct: 25  VEKGGANKVGPNLHGVFGRKT 45


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 464 QLNLNFKWTTGRFQHRADIENDKFFHPIPDVKTALDYFYDF 342
           Q NLNF+  +G+   R D E   FF   P+ K+   +F+DF
Sbjct: 36  QDNLNFQPRSGK---REDFE--PFFQDTPNTKSLSKHFHDF 71


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 404 NDKFFHPIPDVKTALDYFYDFFPEELFSEICE-YTSMYSVQESGRSLNVSI 255
           +DK  HP  D K  + Y Y+FFP +  + +   Y  +  ++  GR + V +
Sbjct: 4   SDKLLHP--DWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDV 52


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 290 PNTCLYIHKFQKIVLLEKSRRNNL 361
           PN   YI+KF   +L +KS  +NL
Sbjct: 200 PNVSYYIYKFPFKILADKSLEDNL 223


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 281 ILGPNTCLYIHKFQKIVLLEKSRRNNLGPSL 373
           I GP+  L+I++  ++  L++  R+N+GP L
Sbjct: 94  IYGPHVELFINRQVELENLKRLARHNIGPYL 124


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 162 YNPRXPRKWGFKNLVRAGASGVI 94
           +NP+ P KW F  ++  G + +I
Sbjct: 96  FNPKTPNKWKFLFILNIGVTALI 118


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 527 INEENSRTKPHNQARHAVRKKQLNLNFKWT 438
           + ++NS ++  N  RH  R+   +L+FK T
Sbjct: 30  LTQKNSSSETENVGRHGKRRMDQDLSFKPT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,113
Number of Sequences: 5004
Number of extensions: 58753
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)