Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0713
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.63 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 SWIVLSFFSSLSTQI*WKCCN 213
           +W +  FF S+ +++ W  CN
Sbjct: 82  AWAIFYFFMSMRSELPWGSCN 102


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 524 NEENSR-TKPHNQARHAVRKKQLNLN 450
           N++N+     HNQARH+ +    N N
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNN 444


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 260 TRSTNVLILGPNTCLYI 310
           T  TNV++    TCLY+
Sbjct: 123 TYPTNVVVKNNGTCLYV 139


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 143 RGXRGLYCLFFPALVPKYDG 202
           +G R  YC F+   +PK  G
Sbjct: 567 KGPRTTYCAFWNEFLPKLKG 586


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 302 LYIHKFQKIVLLEKSRRNNLGPSLH 376
           LYI   QK ++   SRR N G   H
Sbjct: 251 LYISWHQKELVRRDSRRKNYGGVYH 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,782
Number of Sequences: 438
Number of extensions: 4039
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)