Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0711
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 73 2e-13
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 34 0.13
05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381... 31 0.71
03_06_0004 + 30936670-30936726,30936858-30936905,30937045-309370... 31 0.71
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 31 1.2
01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651 30 1.6
09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438... 28 6.6
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 28 8.8
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/89 (42%), Positives = 56/89 (62%)
Frame = +3
Query: 243 RSASHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICL 422
+ + +L H + M V VE V D + A + V+ + T DL +++DF+ CL
Sbjct: 1441 KEVASFLHHQEKMNVLVEPDVHD--IFARIPGYGFVQT---FYTQDTSDLHERVDFVACL 1495
Query: 423 GGDGTLLHASSLFQQSVPPVMAFHLGSLG 509
GGDG +LHAS+LF+ SVPPV++F+LGSLG
Sbjct: 1496 GGDGVILHASNLFRTSVPPVVSFNLGSLG 1524
Score = 35.5 bits (78), Expect = 0.044
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 494 LGLVGFLTPFEFNNFQEQVMNVLEGHAAL----TLRSRLQCVVLRKSQ 625
LG +GFLT F F++ + V+ G+ L TLR RL+C + R +
Sbjct: 1520 LGSLGFLTSHNFEGFRQDLRAVIHGNNTLGVYITLRMRLRCEIFRNGK 1567
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 163 QRLTWYKPPLTVLVIKKVHD 222
Q L W PP TVL++KK+ D
Sbjct: 1415 QMLMWKSPPKTVLLLKKLGD 1434
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 402 IDFIICLGGDGTLLHASSLFQQSVP 476
+D +I +GGDGTLL AS S+P
Sbjct: 86 VDLVISVGGDGTLLRASHFLNSSIP 110
>05_04_0161 +
18635635-18635788,18637117-18637295,18638032-18638145,
18638274-18638368,18638604-18638710,18639455-18639528,
18641170-18641400,18641892-18642197
Length = 419
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 258 WLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICLGGDGT 437
WL ++ +FVE V + L+ E F ++ T L K+D I+ LGGDGT
Sbjct: 182 WLKEHNNINIFVEPRVSKE-LVTEDSYFNFIQTWDNDEEMKT--LHTKVDLIVTLGGDGT 238
Query: 438 LLHASSLFQQS 470
+L ++ +
Sbjct: 239 VLWCHVIYDSA 249
>03_06_0004 +
30936670-30936726,30936858-30936905,30937045-30937080,
30937184-30937258,30937568-30937692,30937770-30937779,
30938125-30938296,30938547-30938665,30938868-30938978,
30939053-30939197,30939340-30939472,30939545-30939620,
30940141-30940206,30940308-30940415,30940750-30940857,
30940948-30941145,30941343-30941591
Length = 611
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = -3
Query: 368 SHQTFLHRRKVSILSKECVV*NCRLDEH 285
SHQ FLHR KVSI+S+E V+ NC ++E+
Sbjct: 420 SHQ-FLHR-KVSIVSQEPVLFNCSIEEN 445
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 536 FQEQVMNVLEGHAALTLRSRLQCVVLR 616
+++ + NVL G ++TLR+RLQC V+R
Sbjct: 388 YRDCLDNVLNGPFSITLRNRLQCHVIR 414
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 390 LTDKIDFIICLGGDGTLL 443
L K+D I+ LGGDGT+L
Sbjct: 357 LHTKVDLIVTLGGDGTVL 374
>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
Length = 187
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 560 LEGHAALTLRSRLQCVVLRKSQMTIKTRRSDHDTGAETRCRGP 688
++G + ++C++ +K + I+ +R DHD G+ T+ GP
Sbjct: 131 VDGDGQINYEEFVKCMMAKKRRKRIEEKR-DHDGGSRTKSAGP 172
>09_03_0098 -
12341741-12341769,12342530-12342927,12343843-12343889,
12344916-12345244,12345523-12345601
Length = 293
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 430 SPPRHMMKSILSVRSSVLALKVIRRSFTDVKSPYSARSV 314
SPP + +S+ +R A RRS T K P S+R V
Sbjct: 247 SPPNSLARSLAGLRHRRSAKSGARRSTTTAKGPTSSRLV 285
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 375 ASTDDLTDKIDFIICLGGDG 434
AST DL+ D IIC+GGDG
Sbjct: 147 ASTVDLSTCPDGIICVGGDG 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,116,982
Number of Sequences: 37544
Number of extensions: 484564
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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