Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0711
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    28   0.079
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    28   0.079
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.42 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 0.079
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 339 SLHTQQGVCRLKLPPRRTPPCFCHERASD*LNEGC 235
           S+  + G+  +K P  R+PP F H R    +++ C
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSC 488


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 0.079
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 339 SLHTQQGVCRLKLPPRRTPPCFCHERASD*LNEGC 235
           S+  + G+  +K P  R+PP F H R    +++ C
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSC 488


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 497  GLVGFLTPFEFNNFQEQVMNVLEGHAALTL 586
            G VGF+TPFE  +F   + + L  +A L +
Sbjct: 978  GRVGFVTPFEHRHFISGIDSNLHVYAPLKI 1007


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 213 GSRRPDTGTLRSASHWLVHD 272
           GS  P+ G +  +  W VHD
Sbjct: 38  GSYGPEAGNVSCSVSWEVHD 57


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 122 FIILPHGPNCCIGD 81
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 122 FIILPHGPNCCIGD 81
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 333 HTQQGVCRLKLPPRRTPP 280
           H Q        PPR+TPP
Sbjct: 384 HWQMSCVACSPPPRQTPP 401


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 122 FIILPHGPNCCIGD 81
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,155
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)