Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0710
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...   134   9e-33
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   3.5  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   3.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   3.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.2  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   8.2  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score =  134 bits (325), Expect = 9e-33
 Identities = 56/86 (65%), Positives = 73/86 (84%)
 Frame = +1

Query: 244 GFRGGYSVTNPNALVLWEAQFGDFNNVAQCIIDQFISSGQAKWVRQSGIVLLQPHGMEGM 423
           GF  GYS+++PNALV+WEAQFGDF N AQCIIDQFI++G+ KW++++GIVL  PHG +G 
Sbjct: 719 GFEYGYSLSSPNALVVWEAQFGDFANNAQCIIDQFIAAGETKWLQRTGIVLSLPHGYDGQ 778

Query: 424 GPEHSSARLERFLQMCSDDPDYMPPE 501
           GPEHSSAR+ER+LQ+C++DP   P E
Sbjct: 779 GPEHSSARMERYLQLCNEDPREFPSE 804



 Score =  102 bits (244), Expect = 6e-23
 Identities = 49/79 (62%), Positives = 60/79 (75%)
 Frame = +2

Query: 17  VDWALAEAMAYGSLLKEGIHVRLSGEDVERGTFSHRHHVLHHQKVDKATYCALAHLYPDQ 196
           +D   AEA+A+G+LL+EG HVR+SG+DVERGTFS RH VLH Q  +   Y  L HL P+Q
Sbjct: 644 IDMPTAEALAFGTLLEEGHHVRVSGQDVERGTFSQRHAVLHDQSSEN-VYIPLNHLSPNQ 702

Query: 197 APYTVCNSSLSEYGVLGFE 253
           A + + NSSLSEYGVLGFE
Sbjct: 703 ASFVIRNSSLSEYGVLGFE 721



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 611 FRKPLILMTPKSLLRHPECKSSFDDMKEGXNFQ 709
           FRKPL++   KSLLRHP  +S+ D+  E   F+
Sbjct: 839 FRKPLVIFFSKSLLRHPAARSTIDEFDEKHGFK 871


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 611 FRKPLILMTPKSLLRHP--ECKSSFD--DMKEGXNFQESY 718
           F+ PL+  TPK  + +P  E KS  D  D +   N  ESY
Sbjct: 122 FKSPLLQSTPKPNINNPDNENKSKHDEFDNRYNININESY 161


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 417 LHAVRLQQYNPGLAHPLGLSAGDELVDDALG 325
           L+A  L+ +NPG AHP G     EL +D LG
Sbjct: 179 LNAALLRYFNPGGAHPSG-----ELGEDPLG 204


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 208 SVGSLVGVQMCQGAVSGLVDLLVVEHVMSVRECASLNIFTRETHVDALLE 59
           SVG  VGV   +    G +DL+VV++   +    SLN+ T+   +DAL E
Sbjct: 301 SVGREVGVTTGRKRRCGWLDLVVVKYSTMINGYTSLNL-TKLDILDALDE 349


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 199 SLHCVQQLTV*VWCPGFRGGYSVTNPNALVLWEAQF 306
           S+  +Q +   + C  F G   +T P  LV W + F
Sbjct: 220 SVPSLQHMGELLQCIAFTGAIGITQPKVLVAWASNF 255


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 99   TSSPERRTWMPSLSRDP*AIASASAQSTVRLST 1
            TSS    +W  S   DP   ASA+  ST  ++T
Sbjct: 948  TSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 309 RLQQRGPVHHRPVHLQRTGQVGA 377
           R+QQ GPV  RP+     G  GA
Sbjct: 381 RIQQEGPVEQRPLCPTLIGSAGA 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,841
Number of Sequences: 5004
Number of extensions: 62755
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)