Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0709
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.7  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   6.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   6.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPPGKPATS 116


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPKTTRS 365
           SN+ +TKSS   +PL    S P K   S
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 459 ELNEQMKASNKFTTHLI 409
           EL +  +A N+FTTH++
Sbjct: 161 ELEKYEQACNEFTTHVM 177


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 282 SNTGSTKSSAS*NPLPDRNSDPPK 353
           SN+ +TKSS   +PL    S P K
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGK 156


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 135 LHAYFCRGVVMLFGLTIHVFFPT--YSLIT*EAISSY 239
           L+ YF   V+ +FG++ + F  T  Y   T   I++Y
Sbjct: 223 LNRYFEVQVLTIFGVSFYFFISTFFYFFTTGNIIATY 259


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 135 LHAYFCRGVVMLFGLTIHVFFPT--YSLIT*EAISSY 239
           L+ YF   V+ +FG++ + F  T  Y   T   I++Y
Sbjct: 219 LNRYFEVQVLTIFGVSFYFFISTFFYFFTTGNIIATY 255


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 147 NKHEDGSYLWGSH 109
           N H  G++ W SH
Sbjct: 168 NVHNSGTHFWHSH 180


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +3

Query: 117 PTGSCHLHAYFCRGVVMLFGLT 182
           P    H  A+ C G    FG T
Sbjct: 11  PAAGFHFGAFTCEGCKSFFGRT 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,025
Number of Sequences: 336
Number of extensions: 3369
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)