Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0709
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   5.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   5.0  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.7  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 82  SVSIKTKKVCPNPSQWLSSTLASIMNN 2
           S SI T +   +PS W+ S  AS+ +N
Sbjct: 164 SSSISTMRTSTSPSNWIHSASASLDDN 190


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = -1

Query: 531 HSGYTIG----PLNATTILFISSD--ICFYELNEQMKASNKFTTHLIL*ESNKEYN 382
           HS Y  G    PLN   I+  SSD  IC YE+ E+ K   KF   L       EYN
Sbjct: 169 HSHYVQGVCWDPLNQY-IVSESSDRSICLYEIQEEKKNPKKFQLVLKSRICRIEYN 223


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 564 PXFSRQGYRDSHSGYTIGPLNATTILFISSDICFYELNEQMKASNKFTTHLIL*ESNKEY 385
           P  S +GYR +++GY    L A     +S     Y +  Q+    +   +++  +  K+Y
Sbjct: 58  PHISYEGYRLTYAGYDYLALKA-----LSKRASVYSVGNQIGVGKESDVYVVGDQKGKQY 112

Query: 384 NSKI 373
             KI
Sbjct: 113 ILKI 116


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 120  TGSCHLHAYFCRGVVMLFGLT 182
            TG C+ HA  C G V +F +T
Sbjct: 1954 TGECNKHAATCTGSVGIFFIT 1974


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,873
Number of Sequences: 5004
Number of extensions: 51791
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)