Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0709
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     30   1.7  
02_03_0262 + 17015383-17015619,17017932-17018879                       28   5.1  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    27   8.9  
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...    27   8.9  

>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 602 STTHKDKLKKHQTXCFLGKGIAIRIPGTPSDRSMPPPYY 486
           S++H+ K K+H++   + +     IPG P    +PPPY+
Sbjct: 735 SSSHEHKNKRHRSNQAMPRWENQTIPGPPVYFPVPPPYF 773


>02_03_0262 + 17015383-17015619,17017932-17018879
          Length = 394

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 252 REPAGSI*AQSNTGSTKSSAS*NPLPDRNSDPPKTTRSN 368
           R PAG   AQ+N+ +  ++A+ + LP  +S P K   SN
Sbjct: 235 RTPAGESSAQNNSIAAAAAAAVSVLPTISSQPSKRKASN 273


>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 282  SNTGSTKSSAS*NPLPDRNSDPPKTTRSN 368
            SN G+  SS    PL  ++SDPPK T+S+
Sbjct: 1764 SNDGTLSSS----PLASQSSDPPKQTKSS 1788


>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 407 CRNRIRNTIRKFPIRSCGLRWIAIPIR 327
           C+    ++I+KFP +SC LR+  + I+
Sbjct: 394 CKKNKSDSIKKFPSKSCPLRYGTVKIQ 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,639
Number of Sequences: 37544
Number of extensions: 324448
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)