Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0709
         (615 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08419-1|CAA69696.1|  468|Homo sapiens nicotinic acetylcholine r...    32   1.8  
U62434-1|AAB40112.1|  468|Homo sapiens nicotinic acetylcholine r...    32   1.8  
M83712-1|AAA58357.1|  468|Homo sapiens nicotinic receptor alpha ...    32   1.8  
BC033639-1|AAH33639.1|  468|Homo sapiens cholinergic receptor, n...    32   1.8  
AJ306481-1|CAC34820.1|  468|Homo sapiens neuronal nicotinic acet...    32   1.8  

>Y08419-1|CAA69696.1|  468|Homo sapiens nicotinic acetylcholine
           receptor alpha5 subunit precursor protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 544 VSRFAFRVHHRTAQCHHHIIYLIRHLFLRT 455
           V+ FA  +HHR++  H+ +  L+R +FL T
Sbjct: 330 VTVFAINIHHRSSSTHNAMAPLVRKIFLHT 359


>U62434-1|AAB40112.1|  468|Homo sapiens nicotinic acetylcholine
           receptor alpha5 subunit precursor protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 544 VSRFAFRVHHRTAQCHHHIIYLIRHLFLRT 455
           V+ FA  +HHR++  H+ +  L+R +FL T
Sbjct: 330 VTVFAINIHHRSSSTHNAMAPLVRKIFLHT 359


>M83712-1|AAA58357.1|  468|Homo sapiens nicotinic receptor alpha 5
           subunit protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 544 VSRFAFRVHHRTAQCHHHIIYLIRHLFLRT 455
           V+ FA  +HHR++  H+ +  L+R +FL T
Sbjct: 330 VTVFAINIHHRSSSTHNAMAPLVRKIFLHT 359


>BC033639-1|AAH33639.1|  468|Homo sapiens cholinergic receptor,
           nicotinic, alpha 5 protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 544 VSRFAFRVHHRTAQCHHHIIYLIRHLFLRT 455
           V+ FA  +HHR++  H+ +  L+R +FL T
Sbjct: 330 VTVFAINIHHRSSSTHNAMAPLVRKIFLHT 359


>AJ306481-1|CAC34820.1|  468|Homo sapiens neuronal nicotinic
           acetylcholine receptor alpha-5subunit protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 544 VSRFAFRVHHRTAQCHHHIIYLIRHLFLRT 455
           V+ FA  +HHR++  H+ +  L+R +FL T
Sbjct: 330 VTVFAINIHHRSSSTHNAMAPLVRKIFLHT 359


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,167,110
Number of Sequences: 237096
Number of extensions: 1825425
Number of successful extensions: 3144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3144
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)