Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0709
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    28   6.1  
Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 611 CFASTTHKDKLKKHQTXCFLGKGIAIRIPGTPSDRSMPPPYYLSHPTFVFT 459
           CFA+T    +L+KH +  F+ K I   +PG  +  +    Y+  H  F+ T
Sbjct: 67  CFANTWFAIRLEKHPSCIFMLKWIETFLPGALT-LAKYHAYWFMHMQFLTT 116


>Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 276 AQSNTGSTKSSAS*NPLPDRNSDPPKTTRSNW 371
           AQ+++ S++S      +P+R    P  +RSNW
Sbjct: 65  AQTSSFSSQSKMKEPEVPEREPSTPNNSRSNW 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,148,701
Number of Sequences: 27780
Number of extensions: 294093
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)