Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0708
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    30   1.4  
10_08_0649 + 19589807-19591024                                         29   3.2  
10_08_0645 - 19562886-19564484                                         28   7.5  
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854...    27   9.9  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 361 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTAS 254
           P T  + T A   S S + C DSPT +T++G  T +
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTT 39


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 CSGFGASTLNWTPSPW 400
           C+G+GA+  +W P PW
Sbjct: 31  CAGWGAAAASWRPRPW 46


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 630 GDGTTSPKWVSRRFVH 583
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


>04_02_0012 +
           8537124-8537464,8537558-8537693,8538811-8538861,
           8540190-8540413,8540491-8540715,8541520-8541619,
           8541703-8541763,8543029-8543100,8543183-8543406
          Length = 477

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 391 WCPIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSF 263
           W P +C G  P      + ASG+ +     +  P FN A  SF
Sbjct: 141 WLPCQCDGCTP----PASAASGSQVGTEYLITRPLFNPARASF 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,741
Number of Sequences: 37544
Number of extensions: 304271
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)