Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0708
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81122-1|CAB03353.1| 124|Caenorhabditis elegans Hypothetical pr... 30 1.6
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 3.8
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 3.8
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 28 5.0
Z80214-5|CAJ76929.1| 916|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z80214-4|CAB02263.1| 982|Caenorhabditis elegans Hypothetical pr... 28 6.7
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 6.7
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 27 8.8
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 8.8
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z81122-1|CAB03353.1| 124|Caenorhabditis elegans Hypothetical
protein T13F2.2 protein.
Length = 124
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 478 SSRMKIMKKVTQGQKSENVE*CQRQSCIAQEECQEMNK 591
SS ++ KKVT+ QK + + +RQS +EE QE+ K
Sbjct: 6 SSEDELEKKVTKEQKKKETKSKKRQSEAVEEEKQEVKK 43
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 302 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 400
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 302 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 400
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 400 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 257
PR+ + +GP+P +NV G S GN+MS L S +F+ + S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786
>Z80214-5|CAJ76929.1| 916|Caenorhabditis elegans Hypothetical
protein C27D8.3b protein.
Length = 916
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 346 NVTGASGNSMSRRTCLDSPTFNTATGSFTASVVTWLPPVSHLIHLVWHLDLTMLD 182
N G GN+ +++ ++S F T +F+ + W HL+ D +LD
Sbjct: 360 NQKGTGGNTAHKKSDVNSQEFVTIPPTFSDNSNAWQTTYPHLLCTTRQKDAVLLD 414
>Z80214-4|CAB02263.1| 982|Caenorhabditis elegans Hypothetical
protein C27D8.3a protein.
Length = 982
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 346 NVTGASGNSMSRRTCLDSPTFNTATGSFTASVVTWLPPVSHLIHLVWHLDLTMLD 182
N G GN+ +++ ++S F T +F+ + W HL+ D +LD
Sbjct: 426 NQKGTGGNTAHKKSDVNSQEFVTIPPTFSDNSNAWQTTYPHLLCTTRQKDAVLLD 480
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 281 YCDW*FYCFCSDMASTCITFNSSGLASGPNNA*RMTSLLLRGYSAFASGS 132
YC W C D++ I F GPN A R+ L++ GY A +G+
Sbjct: 2987 YCGW-LKCCIKDISHIQIQFK------GPNPASRIRQLMILGYPAKTTGT 3029
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 133 DPEAKAEYPRSNKLVIRQALLGPDAKPDELN 225
+ EA A R+ K + ALL PDA PD N
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPN 720
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 62 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 178
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 62 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 178
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,116
Number of Sequences: 27780
Number of extensions: 258431
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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