Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0708
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 174 RHSSSIVRSRCQTR*IKCDTGGSHVTTEA 260
           +H SS   + C    ++C TGG   + E+
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGGPRKSHES 310


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  MTDEFFYGVTLSSSHQSETW 132
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 70  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV 177
           + TD      ++SSS +++ W P+   E    N L+
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 66  NHHDGRVFLWCHPFIITS 119
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 543 PKAKLHRPRRMPRNEQTAWRPILG*SY 623
           P   +H P   P N Q A + I+G  Y
Sbjct: 457 PTRYIHEPWNAPLNVQRAAKCIIGKDY 483


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 343 VTGASGNSMSRRTCLDSPTFNTATGSFTASV 251
           VTG  GN  +    + +P   TAT  +  S+
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSL 82


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 298 DSPTFNTATGSFTASVVTWLPPVSHLIHLVW 206
           D+  +N A   ++++V+     VSH   +VW
Sbjct: 91  DTILYNNADPQYSSAVINTNVIVSHTGEVVW 121


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 292  PTFNTATGSFTAS--VVTWLPPVSHLIH 215
            P  N    + ++S  ++TW PP+  L H
Sbjct: 1009 PPINLEARALSSSEILITWSPPLPELRH 1036


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 292  PTFNTATGSFTAS--VVTWLPPVSHLIH 215
            P  N    + ++S  ++TW PP+  L H
Sbjct: 1005 PPINLEARALSSSEILITWSPPLPELRH 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,089
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)