Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0707
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   123   2e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    78   9e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    76   4e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    75   5e-15
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    32   0.059
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   2.2  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   3.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   9.0  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  123 bits (296), Expect = 2e-29
 Identities = 53/69 (76%), Positives = 61/69 (88%)
 Frame = +3

Query: 252 LEPGTMDSVRSGPFGQIFRXDNFVFGQSGAGNNWAKGHYTEGAEXVDSVLDVVRKEAESC 431
           LEPGTMD+V+SG FG +FR DN ++GQSGAGN WAKGHYTEGAE  D+VLDVVR+EAE+C
Sbjct: 68  LEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEAC 127

Query: 432 DCLQGFQLT 458
           D LQGFQLT
Sbjct: 128 DALQGFQLT 136



 Score =  118 bits (285), Expect = 4e-28
 Identities = 50/70 (71%), Positives = 58/70 (82%)
 Frame = +1

Query: 52  MREIVHIQAGQCGNQIGAKFWEIISDXHGIDPTGAYHGDSDLQLERINVYYNEASXGKYV 231
           MREIVHIQAGQCGNQ+GA FW  I+D HG+D  G YHG S+ Q ER+NVY+NEA+ GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 232 PRAILVDLSP 261
           PRA+LVDL P
Sbjct: 61  PRAVLVDLEP 70


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 77.8 bits (183), Expect = 9e-16
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +3

Query: 252 LEPGTMDSVRSGPFGQIFRXDNFVFGQSGAGNNWAKGHYTEGAEXVDSVLDVVRKEAESC 431
           LEP  +D VR+GP+  +F  +  V G+  A NN+A+GHYT G E +DSVL+ +R+ A++C
Sbjct: 74  LEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNC 133

Query: 432 DCLQGF 449
             LQGF
Sbjct: 134 SGLQGF 139



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = +1

Query: 52  MREIVHIQAGQCGNQIGAKFWEIISDXHGIDPTG------AYHGDSDLQLERINVYYNEA 213
           MRE++ +  GQ G QIG   WE+    HGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 214 SXGKYVPRAILVDLSP 261
             GK+VPR+I VDL P
Sbjct: 61  GQGKFVPRSIYVDLEP 76


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = +3

Query: 252 LEPGTMDSVRSGPFGQIFRXDNFVFGQSGAGNNWAKGHYTEGAEXVDSVLDVVRKEAESC 431
           LEP  +D VR+GP+  +F  +  + G+  A NN+A+GHYT G E VD V D +R+ A++C
Sbjct: 70  LEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNC 129

Query: 432 DCLQGF 449
             LQGF
Sbjct: 130 SGLQGF 135



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = +1

Query: 52  MREIVHIQAGQCGNQIGAKFWEIISDXHGIDPTGAYHGDSDLQLE--RINVYYNEASXGK 225
           MREI+ I  GQ G QIG   WE+    HGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 226 YVPRAILVDLSP 261
           YVPR+I VDL P
Sbjct: 61  YVPRSIYVDLEP 72


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 31/69 (44%), Positives = 48/69 (69%)
 Frame = +1

Query: 55  REIVHIQAGQCGNQIGAKFWEIISDXHGIDPTGAYHGDSDLQLERINVYYNEASXGKYVP 234
           REI+ +QAGQCGNQIG++FW+ +   HGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 235 RAILVDLSP 261
           RAIL+DL P
Sbjct: 63  RAILIDLEP 71



 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
 Frame = +3

Query: 252 LEPGTMDSVRSGPFGQIFRXDNFVFGQS--GAGNNWAKGHYTEGAEXVDSVLDVVRKEAE 425
           LEP  ++++ S  +G ++  +N +  ++  GAGNNWA G Y+      + ++D++ +EA+
Sbjct: 69  LEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREAD 127

Query: 426 SCDCLQGFQL 455
             D L+GF L
Sbjct: 128 GSDSLEGFSL 137


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 201 LQ*SLXRQVRAPRHPRRLEPGTMDSVRSGPFGQIFRXDNFVFGQSGAGN 347
           L+  + R+V AP+H RR   GT    RS     +FR ++  FGQ   GN
Sbjct: 480 LREEVLREVFAPKHARR-RLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 427 DSASFRTTSKTESTXSAPSV*CPLAQLLPAPDCPKTKLSXRKICPK 290
           ++A+ RTTS T+    +PS       L P P    +  S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 91  NQIGAKFWEIISDXHGIDPTGAYHGDSDLQLERI 192
           N++G    E++++   +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 343 PAPDCPKTKLSXRKICPKGPERTESMVPGS 254
           P+   PK  L  R I P GPE  +  + GS
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGS 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,189
Number of Sequences: 5004
Number of extensions: 28349
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)