Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0706
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   0.72 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   5.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.9  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   8.9  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 217 PPFTKLNKK---LEKPEDEGRGRSRQKRRYLY 303
           PP  K ++K   LE+P   G+G+  +K R +Y
Sbjct: 97  PPSPKDDEKCLSLERPSGGGKGKKMRKPRTIY 128


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 348 ATSVLRCWVFHSL 310
           AT++LR W+F  L
Sbjct: 189 ATNILRAWLFQHL 201


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 348 ATSVLRCWVFHSL 310
           AT++LR W+F  L
Sbjct: 345 ATNILRAWLFQHL 357


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 522 SPMPLLYPFAEHXPILARSP*SLRPNE 442
           SP+PLL P  +     A S  +  P++
Sbjct: 194 SPLPLLVPIPQRTASTASSASNYSPSQ 220


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 268 RGRSRQKRRYLYHY*AVEYPAPE 336
           +G   Q   Y  HY  V YP PE
Sbjct: 83  KGTILQLHIYDLHYNPVIYPEPE 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,755
Number of Sequences: 336
Number of extensions: 2472
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)