Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0706
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.36 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.36 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.36 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  RTVPVGAWAGVNDGSALVKNEQRQRHARHR 103
           + VP   W GV  GSA    E+RQ +  H+
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREERQAYYLHQ 186


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 210 RNDGIRHXWRALQHHGAACPWTSLRRSDQTQGTCPG 103
           RN G+ H  +  QH+GAA       +S Q Q    G
Sbjct: 14  RNGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQAG 49


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  RTVPVGAWAGVNDGSALVKNEQRQRHARHR 103
           + VP   W GV  GSA    E+RQ +  H+
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREERQAYYLHQ 186


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 EKPEDE-GRGRSRQKRRYLYHY*AVEYPAP 333
           E+  D  GRGRSR+ R    HY   + PAP
Sbjct: 313 ERSRDRRGRGRSREHRIIPSHY-IEQIPAP 341


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 23  PVGAWAGVNDGSALVKNEQRQRHARHR 103
           P   W  V  GSA   NE+R+++  H+
Sbjct: 160 PPNNWLSVFWGSAWQWNEERKQYYLHQ 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,117
Number of Sequences: 438
Number of extensions: 3200
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)