Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0704
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    28   0.62 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   4.4  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   4.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   5.8  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   5.8  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.6  

>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 228 LNRVITTGENFASAHRMLCISLKTRMQKTVKASSRHAEDWSQAPVFVRRQGTSAQLEPLC 407
           + R I TG  FAS    LC     ++      + +HA     A V+ RR  +  QL  LC
Sbjct: 12  IGREIGTGA-FASVR--LCYDDNAKIYAVKFVNKKHATSCMNAGVWARRMASEIQLHKLC 68


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 206 IFISCTRPQPCDHYWGKLRLC 268
           I +S  RP  C  YW   RLC
Sbjct: 714 IVLSTMRPYLCSIYWAGSRLC 734


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 31  LYKFVEICTMEWMVPVNEML 90
           LYK +E C M++ +P+  +L
Sbjct: 714 LYKILEACFMQFRIPIQHVL 733


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 388 ALVPCRRTKTGACDQSSACRLLAFTVFCILVFKD 287
           A   C  TK    ++SSACR LA   FC++   D
Sbjct: 134 ARAKCLLTKEDLYNRSSACRYLA--AFCLVKLYD 165


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 330 DCSPSPFFASWSLRIYTTCDGQRR 259
           D    PF +  +  ++TTC+G+RR
Sbjct: 620 DTITKPFVSFQTAMLHTTCNGERR 643


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 404 ERLQLRTCSLSSNKNRCLRPIFSMPTARLHRFLHPGL 294
           E + L  C LS+ K RC+  I  +P   +  FL  G+
Sbjct: 250 ENIMLTMCPLSNLKLRCVNSIAELP---VREFLEAGV 283


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 YWGKLRLCPSHVVYILKDQDAKNGEG 322
           Y G+  L PS + Y+L      NGEG
Sbjct: 131 YPGEAPLPPSSIGYVLPPSSLANGEG 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,000
Number of Sequences: 5004
Number of extensions: 35390
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)