Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0704
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    31   0.41 
U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    31   0.54 
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    28   2.9  

>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 79  NEMLRDEITRIDYNLMTDTFEGNIRTVRMLQDSLSKLIDVLENIHQLHKASTV 237
           N++  DE+ +IDYN   +     +   ++L+ S+S+  D+ +N      +S+V
Sbjct: 198 NDVFEDEVKKIDYNKRFEEKVSLLSPPQVLERSMSQCCDIQKNNQHARPSSSV 250


>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 195 CPGEYSSAAQGLNRVITTGENFASAHRMLCISLKTRMQKTVKASSRHAEDWSQAPVFVRR 374
           C GE SS   G  RVIT  +            +        K+  +         +++  
Sbjct: 40  CLGEMSSKFHGWKRVITMYDKIVDHDEEQTTYIMWEKVNGSKSILKGLLRVGYKTLYLTD 99

Query: 375 QGTSAQLEP-LCVLDFYVVCNRQRTGCGEETF 467
              +  +E  +C+LDF+VV   QR+G G + F
Sbjct: 100 NEQNQYMEKAMCILDFFVVPTEQRSGNGFKMF 131


>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +3

Query: 228 LNRVITTGENFASAHRMLCISLKTRMQKTVKASSRHAEDWSQAPVFVRRQGTSAQLEPLC 407
           L   +TT E   ++   L +S K   ++ V      A+   +       Q  + + E LC
Sbjct: 48  LRTPLTTCEKLINSDSTLYLSWKYDEEEKVSRLMGFAKVGRKKLFLYDSQMQTYEGEILC 107

Query: 408 VLDFYVVCNRQRTGCGEE 461
           +LDFYV  + QR G G++
Sbjct: 108 LLDFYVHFSCQRQGVGQQ 125


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
 Frame = +1

Query: 76   VNEMLRDEITRI-----DYNLMTDTFEGNIRTVRMLQ----DSLSKLIDVLENIHQLHKA 228
            +++ LRD  TR+     + ++M +  E + R  R LQ    DS+S   D  +N+H+L KA
Sbjct: 1471 MSQELRDRETRVLSLLNEVDIMKEHLEESDRVRRSLQQELQDSISNKDDFGKNVHELEKA 1530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,768,705
Number of Sequences: 27780
Number of extensions: 216509
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)