Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0698
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 4e-06
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 40 5e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 39 8e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.010
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.010
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.031
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.031
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.041
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.041
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.071
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.094
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.094
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.094
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.094
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.094
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.12
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.22
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.29
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.88
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 1.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.7
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 4.7
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 6.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.2
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 8.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 8.2
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 4e-06
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+ E+A EL+ L R R+ ++ + ++R +KNL P + N+ L+ +F FG
Sbjct: 133 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 192
Query: 417 KIERAYVKVDERGKTLGEGVVEFARKPSA 503
KI V VDE G G G V F SA
Sbjct: 193 KILSCKVAVDELGNAKGYGFVHFDSVESA 221
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN-----FGFI 243
+ +YI NL ++TE+E +F FGE + L L K++N FGF+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 354 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSQFVT 521
+KNL V +E L F FG I A + DE+GK+ G G V + P ++ VT
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYT-TPEEANKAVT 422
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKM 249
P + +K R+ L++G +T V E + MF FG L LN GF+KM
Sbjct: 394 PTIPPDSIKVYSRT-LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 VKFNGRSR-LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
V+ +G R +++GNL N +TE+EI + PFG ++ + E+N F+
Sbjct: 199 VQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFV 246
Score = 33.5 bits (73), Expect = 0.031
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 GRSR-LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
G SR +YIGN + +T E + + F FGE + +EKN F+
Sbjct: 411 GASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFV 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEI 171
P +++ ++ G +YIGN+ D T EEI
Sbjct: 310 PVLQKPDLIMTGNRTVYIGNIHADTTIEEI 339
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 109 FNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
++ + +YIGNL D+ E++I+ +FS FGE ++ L ++K G
Sbjct: 27 YSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETG 69
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELF 213
S +Y+GN+ + +++EEI+K FS +G+ +F
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 279 RELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGK 458
R+ G++ TL + + P++ + V NL V++E LY++F + + + V D GK
Sbjct: 10 RKAGGQVWEDPTL-LEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK 68
Query: 459 TLGEGVVEF 485
T G G V F
Sbjct: 69 TRGFGFVSF 77
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGFI 243
RL++GNL NDV +E + + FS + + + K + FGF+
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFV 75
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.031
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +1
Query: 76 DLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGF 240
+L +E+ F+ RL + N+ ++T+E++ +F PFG+ + L N+ K FG+
Sbjct: 328 ELARAASAEIPFH---RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGY 384
Query: 241 IK 246
I+
Sbjct: 385 IQ 386
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.031
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 333 PHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALS 509
P + + V NLP S+ L F G + RA + + G++ G GVV+F + A S
Sbjct: 277 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAAS 335
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.041
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 LPPMEQSEVKFNGRSR-LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
LP Q+ SR ++IGNL + E+EI + F FG+ + + +KN F+
Sbjct: 284 LPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFV 339
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/55 (20%), Positives = 27/55 (49%)
Frame = +1
Query: 79 LPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
LP + + + +Y ++++ +T EE+ + +GE + K ++ GF+
Sbjct: 486 LPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFV 540
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.1 bits (72), Expect = 0.041
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
L + NL++D EEE+ +F FG ++L K+K G K
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.071
Identities = 25/55 (45%), Positives = 30/55 (54%)
Frame = +3
Query: 339 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSA 503
NS V V L FVS E L F+ FG+I YVK+ GK G G V+F + SA
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPP-GK--GCGFVQFVNRQSA 351
Score = 31.9 bits (69), Expect = 0.094
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
S +++G L+ V+EEE+ +F FGE + + K GF++
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQ 344
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 28 EIILSNKLKD---LQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGE 198
E + ++K+ D LQ ++ E++ + RL++ NLT E+++ +F PFG+
Sbjct: 289 ERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQ 348
Query: 199 ASELFLNKEK 228
++ + +K
Sbjct: 349 LEQVHMPIDK 358
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFL 216
L + N + EE+ +FSPFGE + +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.094
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD*ELMQREQNVNWME 294
+++G L ++++E+++ F PFG + + K GF++ E E+ +N M+
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYS-EKSAAEKAINTMQ 353
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 31.9 bits (69), Expect = 0.094
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
+++++G + D TEEE F+ FG + L +K+ G
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTG 285
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
+++IG L + T++ + F FGE + + ++ G
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.9 bits (69), Expect = 0.094
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 118 RSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNK-----EKNFGFIKMD 252
++ +++GNL VTE + F PFGE + L++ ++++ F++ D
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFD 54
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 342 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEF 485
+ V V NL P V+ LLY +F FG+I + E+ VEF
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF 53
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASEL-FLNKEKNFGFIKMD*ELMQREQNVNWME 294
R+Y+G L++ + ++ FS FG S L +NK G I+ L R W +
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 151 DVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+ TEE++ +F+ FG L LN ++ G++K
Sbjct: 20 EATEEQVEDLFADFGPVKNLHLNLDRRTGYVK 51
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASEL-FLNKEKN 231
+Y+GNL + ++ ++F PFG S+ L+++KN
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKN 57
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+Y+GNL+ TEE+I +FS GE + + ++
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDR 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.88
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFGE 198
+ + ++YI NL ++ E++++++ PFG+
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGD 335
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +1
Query: 1 DNMKPAQREEIILSNKLKDLQGPLFDLPPMEQSE--VKFNGRSRLYIGNLTNDVTEEEIM 174
DN K + +I S + L DL + E V+ + + LY+ N E +I
Sbjct: 624 DNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFPPTYDELDIT 683
Query: 175 KMFSPFGEASE-----LFLNKEKNFGFIKM 249
K+FS +G + L N + F +++M
Sbjct: 684 KLFSAYGNVVDVRFPSLRYNTNRRFCYVQM 713
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 348 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSAL 506
V ++ LPP S+E L FGK+ + +D E G G F + SAL
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +1
Query: 46 KLKDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE 225
KL+ +Q L + +++ + +Y+GN+ VT EE+ F+ G + + + +
Sbjct: 30 KLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCD 89
Query: 226 KNFGFIK 246
K G K
Sbjct: 90 KFTGHPK 96
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -2
Query: 711 RVHIRFETI*TLRNVVQAHELS*NSGCFWGRFFSGYPSNXSGSSKLSTMTGRRDDVKKKH 532
++H FE LR V H G FW RFF +++ M DD+ K+
Sbjct: 146 QIHDMFEQHPLLRKVYDKHVPPLAEGEFWSRFFLSKLCKKLRGDRITPM-DPSDDIMDKY 204
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++GNL+ + TE+++ F G+ + L + G +K
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLK 407
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 342 SAVRVKNLPPFVSNELLYRSFEIFGKIE 425
++V VKN+PP S+ L + IFG ++
Sbjct: 315 TSVFVKNIPPETSDVSLKSAMSIFGPVK 342
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 10 KPAQREEIILSNKLKDLQGPLFD---LPPMEQSEVKFNGRS---RLYIGNLTNDVTEEEI 171
+P + E + +LK LQ FD L +S V+ + S +Y+GNL+N E+++
Sbjct: 559 RPLRSAEYVRVCELKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNLSNPDQEKKL 618
Query: 172 MKMFS 186
FS
Sbjct: 619 RLAFS 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,367
Number of Sequences: 5004
Number of extensions: 59949
Number of successful extensions: 244
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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