Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0697
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 75 2e-14
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 75 2e-14
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 53 8e-08
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 41 5e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 37 0.008
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 37 0.008
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 37 0.008
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.008
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 36 0.010
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 36 0.010
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 36 0.014
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 36 0.018
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 35 0.032
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 35 0.032
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 35 0.032
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 34 0.056
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.074
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.074
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 33 0.097
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 33 0.097
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 33 0.097
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.13
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 33 0.13
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.13
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 32 0.17
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 32 0.17
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 32 0.17
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 32 0.17
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 32 0.17
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.39
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.52
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.52
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.52
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 0.69
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 0.69
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 0.69
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 0.69
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 0.69
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 0.91
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 30 0.91
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 30 0.91
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 30 0.91
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 30 0.91
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 0.91
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 0.91
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 0.91
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 29 1.2
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 2.8
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 28 2.8
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 28 2.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 2.8
U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical pr... 28 3.7
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 28 3.7
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 4.8
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 4.8
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 4.8
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 4.8
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 4.8
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 27 4.8
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 27 4.8
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 4.8
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 27 4.8
AC025721-7|AAK29911.3| 668|Caenorhabditis elegans Half transpor... 27 4.8
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 4.8
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 27 6.4
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 27 8.4
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 75.4 bits (177), Expect = 2e-14
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +3
Query: 255 RVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAY 434
R +AE AK +DG++ + R +RVRFA H +A+RVK L P VSNE+LY +F FG +ERA
Sbjct: 160 RAHAESAKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAV 219
Query: 435 VKVDER 452
VDE+
Sbjct: 220 HIVDEK 225
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/54 (44%), Positives = 38/54 (70%)
Frame = +1
Query: 91 EQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
E + KF GR RL++GNL N+V E E+ ++FSP G+ +E +L+ K F F+++D
Sbjct: 106 EVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLD 158
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 75.4 bits (177), Expect = 2e-14
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +3
Query: 255 RVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAY 434
R +AE AK +DG++ + R +RVRFA H +A+RVK L P VSNE+LY +F FG +ERA
Sbjct: 160 RAHAESAKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAV 219
Query: 435 VKVDER 452
VDE+
Sbjct: 220 HIVDEK 225
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/54 (44%), Positives = 38/54 (70%)
Frame = +1
Query: 91 EQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
E + KF GR RL++GNL N+V E E+ ++FSP G+ +E +L+ K F F+++D
Sbjct: 106 EVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLD 158
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 53.2 bits (122), Expect = 8e-08
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +1
Query: 91 EQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKM 249
E + KF GR RL++GNL N+V E E+ ++FSP G+ +E +L+ K F F+++
Sbjct: 106 EVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRL 157
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIKMD 252
N + LY+G T DVTE+ +M F PFG+ + + K + FGF++ D
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFD 60
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN+ + +TE+EI + F+ FG +E+ + K + + F+K D
Sbjct: 130 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFD 170
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
P +QS++ +++G+L+++V +++ + F PFG+ S+ + K K +GF+
Sbjct: 9 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 68
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN+ + +TE+EI + F+ FG +E+ + K + + F+K D
Sbjct: 140 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFD 180
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
P +QS++ +++G+L+++V +++ + F PFG+ S+ + K K +GF+
Sbjct: 19 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 78
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN+ + +TE+EI + F+ FG +E+ + K + + F+K D
Sbjct: 243 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFD 283
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
P +QS++ +++G+L+++V +++ + F PFG+ S+ + K K +GF+
Sbjct: 122 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 181
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASE 207
LY+GNL + VTE+ I +F+ G ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTK 74
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN+ + +TE+EI + F+ FG +E+ + K + + F+K D
Sbjct: 211 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFD 251
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
P +QS++ +++G+L+++V +++ + F PFG+ S+ + K K +GF+
Sbjct: 90 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 149
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASE 207
LY+GNL + VTE+ I +F+ G ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTK 74
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 36.3 bits (80), Expect = 0.010
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1
Query: 37 LSNKL-KDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGE----- 198
+ NK+ K L+ + +PP E+ + + +S ++IGN+ + T EEI + F G+
Sbjct: 28 IQNKMAKHLESAAY-VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEIEEHFKGCGQIVKTT 85
Query: 199 -ASELFLNKEKNFGFIKMD 252
+ F K+KNF +I+ D
Sbjct: 86 IPKDKFTKKQKNFAYIEFD 104
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 36.3 bits (80), Expect = 0.010
Identities = 14/46 (30%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 118 RSRLYIGNLTNDV-TEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
R+R++IGN+ + T ++I+++F PFG+ + ++ FGF++ +
Sbjct: 82 RARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFN 127
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 35.9 bits (79), Expect = 0.014
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1
Query: 37 LSNKL-KDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGE----- 198
+ NK+ K+L+ + +PP E+ + + +S ++IGN+ + T EE+ + F G
Sbjct: 34 IQNKMAKNLESAAY-VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEVEEHFKGCGHIVRTT 91
Query: 199 -ASELFLNKEKNFGFIKMD 252
+ F K+KNF +I+ D
Sbjct: 92 IPKDKFTKKQKNFAYIEFD 110
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 35.5 bits (78), Expect = 0.018
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASE------LFLNKEKNFGFI 243
PPME + + +++G+L+ DV+ E + F+ FGE SE + K K +GF+
Sbjct: 123 PPMEM-RIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFV 181
Score = 35.5 bits (78), Expect = 0.018
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN++ T+ ++ +FS +G+ +E+ + K + + F++ +
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYE 280
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+AERA ++ + + + +R+ ++ + A+R +KNL + N+ +Y +F +FG
Sbjct: 85 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 417 KIERAYVKVDE 449
I V +DE
Sbjct: 145 NILSCKVAIDE 155
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+AERA ++ + + + +R+ ++ + A+R +KNL + N+ +Y +F +FG
Sbjct: 22 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 81
Query: 417 KIERAYVKVDE 449
I V +DE
Sbjct: 82 NILSCKVAIDE 92
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+AERA ++ + + + +R+ ++ + A+R +KNL + N+ +Y +F +FG
Sbjct: 85 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 417 KIERAYVKVDE 449
I V +DE
Sbjct: 145 NILSCKVAIDE 155
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.056
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++ N+ + TE+++ FS +G+ + LN ++ GF+K
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLK 96
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.074
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = +1
Query: 79 LPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGE--ASELFL----NKEKNFGF 240
LP + EV L+I +L + + E+++MF+PFG ++++F+ N+ K FGF
Sbjct: 415 LPMVTPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGF 474
Query: 241 IKMD 252
+ D
Sbjct: 475 VSYD 478
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASEL 210
+L+IG L+ +E+E+ +F+ FGE E+
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEV 153
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+L++G + ++ E+++ +F FG+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.074
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = +1
Query: 79 LPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGE--ASELFL----NKEKNFGF 240
LP + EV L+I +L + + E+++MF+PFG ++++F+ N+ K FGF
Sbjct: 415 LPMVTPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGF 474
Query: 241 IKMD 252
+ D
Sbjct: 475 VSYD 478
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASEL 210
+L+IG L+ +E+E+ +F+ FGE E+
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEV 153
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+L++G + ++ E+++ +F FG+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 33.1 bits (72), Expect = 0.097
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-NKEKNFGFIKMD 252
+++Y+G L +D T +E+ ++F FG ++++ + F F++ D
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 33.1 bits (72), Expect = 0.097
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-NKEKNFGFIKMD 252
+++Y+G L +D T +E+ ++F FG ++++ + F F++ D
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 33.1 bits (72), Expect = 0.097
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-NKEKNFGFIKMD 252
+++Y+G L +D T +E+ ++F FG ++++ + F F++ D
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
S+L++GNL ++V ++ ++F PF + +E + KN+ F+ ++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE 44
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
S+L++GNL ++V ++ ++F PF + +E + KN+ F+ ++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE 44
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+Y+GN+ N + E+EI + F FG +E+ K + + F+K +
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFE 298
Score = 30.3 bits (65), Expect = 0.69
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
P +S+ + + +++G+L +++ ++ + F FGE SE + NK K +GF+
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 244 ----KMD*ELMQREQNVNWM 291
+ D E E N W+
Sbjct: 179 SYPRREDAERAIDEMNGAWL 198
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+AERA ++ ++ + R +R+ ++ + A R +KNL + N+ +Y +F +FG
Sbjct: 110 DAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 417 KIERAYVKVDE 449
I V D+
Sbjct: 170 NILSCKVATDD 180
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGFI 243
+ +++ N + +E++ MFS FGE + + K K FGF+
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFAPHNSAVR--------VKNLPPFVSNELLYRSFEIFG 416
+AERA ++ ++ + R +R+ ++ + A R +KNL + N+ +Y +F +FG
Sbjct: 110 DAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 417 KIERAYVKVDE 449
I V D+
Sbjct: 170 NILSCKVATDD 180
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGFI 243
+ +++ N + +E++ MFS FGE + + K K FGF+
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++G L VT EEI +MFS FG + ++ ++++G+ K
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++G L VT EEI +MFS FG + ++ ++++G+ K
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++G L VT EEI +MFS FG + ++ ++++G+ K
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 146
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++G L VT EEI +MFS FG + ++ ++++G+ K
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.39
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
+YIG L+ ++E +++ +FS +GE + L ++K+ G
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTG 76
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.52
Identities = 11/46 (23%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
++++G LT++ T++ + + +S FGE +++ + + + FGF+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEA--SELFLN----KEKNFGFIKMD 252
RLY+ + D TE+ + + F+ +G SE+ L+ K + FGF+ D
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 0.52
Identities = 11/46 (23%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
++++G LT++ T++ + + +S FGE +++ + + + FGF+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEA--SELFLN----KEKNFGFIKMD 252
RLY+ + D TE+ + + F+ +G SE+ L+ K + FGF+ D
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.52
Identities = 11/46 (23%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
++++G LT++ T++ + + +S FGE +++ + + + FGF+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEA--SELFLN----KEKNFGFIKMD 252
RLY+ + D TE+ + + F+ +G SE+ L+ K + FGF+ D
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEA--SELFLN----KEKNFGFIKMD 252
RLY+ + D TE+ + + F+ +G SE+ L+ K + FGF+ D
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEA--SELFLN----KEKNFGFIKMD 252
RLY+ + D TE+ + + F+ +G SE+ L+ K + FGF+ D
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
SR+Y+G+++ ++ E+ + + F PFG + ++ + G K
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHK 143
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
SR+Y+G+++ ++ E+ + + F PFG + ++ + G K
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHK 143
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
SR+Y+G+++ ++ E+ + + F PFG + ++ + G K
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHK 143
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLN 219
M S + + ++++IG L N +TE+++ ++ FG LN
Sbjct: 280 MPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
+L+IG L++D T+E++ FS +G + + ++ N
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPN 85
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
+L+IG L++D T+E++ FS +G + + ++ N
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPN 105
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
+L+IG L++D T+E++ FS +G + + ++ N
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPN 106
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 43 NKLKDLQGPLF-DLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLN 219
NK +D F +LPP + + F+ ++++G + D+TE + F FG + +
Sbjct: 270 NKNRDSDATWFGELPPRDYTSPTFS--RKIFVGGVPWDITEAALKDSFGEFGSCAVEWPG 327
Query: 220 KEKNF 234
+E +
Sbjct: 328 QEARY 332
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLN 219
M S + + ++++IG L N +TE+++ ++ FG LN
Sbjct: 280 MPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLN 219
M S + + ++++IG L N +TE+++ ++ FG LN
Sbjct: 255 MPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 298
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLN 219
M S + + ++++IG L N +TE+++ ++ FG LN
Sbjct: 258 MPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 301
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 79 LPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+ P + + K + RS +Y+GN+ T EI + F+ G+ + + + K+K G+ K
Sbjct: 33 MAPTAEEQEKTDARS-VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQK 87
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
RL++ NL E+++ +F +GE SE+ + +K G K
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACK 320
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASE 207
LY+GNL + VTE+ I +F+ G ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTK 74
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/61 (19%), Positives = 34/61 (55%)
Frame = +1
Query: 28 EIILSNKLKDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASE 207
++ L+ + + ++G ++ P + E K ++++G L +D +E+++ F FG+ +
Sbjct: 84 KLALAAREQTIKGKSVEVKPAKSRENK-----KVFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 208 L 210
+
Sbjct: 139 I 139
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/44 (20%), Positives = 25/44 (56%)
Frame = +1
Query: 106 KFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
K N ++++G ++ +V E++ F+ +GE ++ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/61 (19%), Positives = 34/61 (55%)
Frame = +1
Query: 28 EIILSNKLKDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASE 207
++ L+ + + ++G ++ P + E K ++++G L +D +E+++ F FG+ +
Sbjct: 84 KLALAAREQTIKGKSVEVKPAKSRENK-----KVFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 208 L 210
+
Sbjct: 139 I 139
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/44 (20%), Positives = 25/44 (56%)
Frame = +1
Query: 106 KFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
K N ++++G ++ +V E++ F+ +GE ++ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical
protein F45F2.10 protein.
Length = 980
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 288 DGKLRNSRTLRVRFA-PHNSAVRVKNLPPFVSNELLYRSFEI 410
DG + L F+ HN + NLPP +SN L +S ++
Sbjct: 779 DGNVDRREILEPFFSFEHNGIIYAYNLPPIISNNLETKSKQV 820
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEAS-ELFLNKEK 228
+Y+ NL D+T+EE K S G ++ NK K
Sbjct: 181 VYVSNLPEDITDEEFQKFMSKCGVIQPDIRTNKPK 215
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGE------ASELFLNKEKNFGFIKMD 252
S LY+ + +T E+ +F PFG+ S+ K GF++ D
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFD 177
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE------KNFGFI 243
+++IG L+ T E + F FGE +E + ++ + FGFI
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 88 MEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKN 231
M+ ++ + +L+IG L+ EE + ++F+ FG + + ++++
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD 178
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
LYI N+ VTEE++ ++F + + K K++ FI
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDR--VKKVKDYAFI 415
>AC025721-7|AAK29911.3| 668|Caenorhabditis elegans Half transporter
(pgp related)protein 6 protein.
Length = 668
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 453 LFHQLLHKPSQFFQIFQMNDIIAHLKQMAEGFLHALHYCVVQTL 322
LF +LLH FF + ++ A L + F + CV Q L
Sbjct: 184 LFQKLLHHDMAFFDSHKSGELSARLNADVQEFKSSFKLCVSQGL 227
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE------KNFGFI 243
+++IG L+ T E + F FGE +E + ++ + FGFI
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
+G +Y+GN TEEE+ FS G+ + + + ++ G
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETG 43
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGE 198
+++IG L DV+EE++ F FG+
Sbjct: 246 KVFIGGLPIDVSEEQVWATFGAFGK 270
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 181 FSPFGEASELFLNKEKNFGFIKMD 252
F+ G++++ NK NFGF+K+D
Sbjct: 6 FADLGKSAKDLFNKGYNFGFLKID 29
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFGEA 201
N + L+IG++ D TEE + ++F+ G A
Sbjct: 65 NAQRTLWIGDVPTDWTEETLSQVFTECGHA 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,285,463
Number of Sequences: 27780
Number of extensions: 199074
Number of successful extensions: 637
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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