Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0697
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    26   0.17 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.7  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 168 NYEDV*SLWRSF*IILEQRKELWIH*NGLRVNAER--AKRELDGKLRNSRTLRVRFAPHN 341
           NY+D   +  ++ I +++   LW+  +GL  N +   + + L   L  S+ L+    PHN
Sbjct: 118 NYKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLMCSPKLLAFDLNTSKLLKQIEIPHN 177

Query: 342 SAV 350
            AV
Sbjct: 178 IAV 180


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 168 NYEDV*SLWRSF*IILEQRKELWIH*NGLRVNAE-RAKRELD-GKLRNSRTLRVRFAPHN 341
           NY+D   +  ++ I +++   LWI  +G+  N +     +L    L  S  L+    PH+
Sbjct: 118 NYKDCSGIVSAYKIAIDKFDRLWILDSGIINNTQPMCSPKLHVFDLNTSHQLKQVVMPHD 177

Query: 342 SAV 350
            AV
Sbjct: 178 IAV 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,591
Number of Sequences: 438
Number of extensions: 2557
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)