Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0696
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   2.8  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   8.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 EGIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 350
           +G FKR  +    Y  +E     + ++ RNR  Y
Sbjct: 107 KGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQY 140


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 322 PDKHAIVATTTFPGKP 369
           P KH +   T  PG+P
Sbjct: 267 PSKHGLNDATAAPGEP 282


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 GIFKRAEQYVKEYRIKERDE 311
           G FKR+ +  ++Y  K +DE
Sbjct: 60  GFFKRSIRRNRQYVCKAKDE 79


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 GIFKRAEQYVKEYRIKERDE 311
           G FKR+ +  ++Y  K +DE
Sbjct: 60  GFFKRSIRRNRQYVCKAKDE 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,203
Number of Sequences: 336
Number of extensions: 1211
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)