Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0696
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 54 7e-09
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 54 7e-09
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 51 8e-08
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 2.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 2.7
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 26 2.7
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 2.7
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 4.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 24 8.4
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 54.4 bits (125), Expect = 7e-09
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +3
Query: 240 QEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
++ E I KRAE Y EYR ER++I L R+AR GNYYVP E KL
Sbjct: 47 KKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKL 91
Score = 37.1 bits (82), Expect = 0.001
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +1
Query: 130 SKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNVM 309
SK+ ES LK +K +E R +R+ +++++ KK+ ++ S
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 310 KSD*PDKHAIVATTTFPGKPNWAFVIRIRGINQVSP 417
+ + K P + FVIRIRGIN + P
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPP 105
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 54.4 bits (125), Expect = 7e-09
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +3
Query: 240 QEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
++ E I KRAE Y EYR ER++I LAR+AR GNY+VP E KL
Sbjct: 46 KKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKL 90
Score = 33.1 bits (72), Expect = 0.018
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +1
Query: 154 ESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNVMKSD*PDKH 333
ES LK K ++ R + + +++S+ KK+ ++ + + + + K
Sbjct: 17 ESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKA 76
Query: 334 AIVATTTFPGKPNWAFVIRIRGINQVSP 417
P +P FV+RIRGIN + P
Sbjct: 77 RAEGNYFVPHEPKLIFVVRIRGINNIPP 104
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 50.8 bits (116), Expect = 8e-08
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +3
Query: 258 FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL
Sbjct: 51 FKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKL 89
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 2.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 264 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 365
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 2.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 118 GKEDSKKLPAVXESXLKHRKXREALRTKRLQV----TLKRRSSAIKK--KRESSRGLNST 279
GKE SK+ + + K +K + ++KRL++ T KR+ K K+ S GL
Sbjct: 135 GKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKV 194
Query: 280 S 282
S
Sbjct: 195 S 195
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 216 AKEAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGN 347
AKE FF HQ E ++ ++ +K +R +E DE+ + + N
Sbjct: 47 AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 302 FLDAVFLDVLFSPLEDSLFFLMAEERLFSVTC 207
FL +V+ + S +ED L E+++FSV C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 4.8
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 181 REALRTKRLQVTLKRRSSAIKKKRE----SSRGLNSTSRNTASRNVMKSD*PDK 330
+++ R RLQ ++++ +A+KK++E +S +S S N S + SD D+
Sbjct: 137 KDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADE 190
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 24.6 bits (51), Expect = 6.3
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Frame = +1
Query: 187 ALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNVMKSD*PDKH-------AIVA 345
AL++ ++ +++ A + K++SS S N + N K+ P + +I+
Sbjct: 747 ALKSPLIKKNIQQAELA-QNKQQSSVTTASPRSNALNANTPKAAAPSSNVTMKNVTSILE 805
Query: 346 TTTFPGKPNWAFVIRIRG--INQVSP 417
T+TF G+ W+ V+ G +NQ SP
Sbjct: 806 TSTFEGEDTWS-VVGPGGKIVNQQSP 830
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 299 LDAVFLDVLFSPLEDSLFFLMAEERLFS 216
L ++FLD+ +SP + +F + + RL S
Sbjct: 494 LSSMFLDIKYSPSSEHIFEIESSLRLSS 521
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 24.2 bits (50), Expect = 8.4
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 190 LRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKP 369
LRT + +T K +SAI+ K L N + + +D P + FP +P
Sbjct: 155 LRTTEVLITPKPNTSAIEVKENRKVNLRCVVENRLLPDSVTADSP-ALCVFLPLNFPDRP 213
Query: 370 NWAFV 384
+ ++
Sbjct: 214 DVVYM 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,979
Number of Sequences: 5004
Number of extensions: 19975
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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